RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 AKT3Q9Y243 479 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 A0A087WZ62 844 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 EPB41L2O43491 1005 aaKnown RBP7.57□□□□□ -1.2
VPS53-213ENST00000572334 LAG3P18627 525 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 PSMA5P28066 241 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 SFNP31947 248 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 JAK3P52333 1124 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 NLRP5P59047 1200 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 ZXDAP98168 799 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 AKAP17AQ02040 695 aaKnown RBP7.57□□□□□ -1.2
VPS53-213ENST00000572334 NHLH1Q02575 133 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 EARS2Q5JPH6 523 aaKnown RBP7.57□□□□□ -1.2
VPS53-213ENST00000572334 SPOUT1Q5T280 376 aaKnown RBP7.57□□□□□ -1.2
VPS53-213ENST00000572334 IER5LQ5T953 404 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 PDE12Q6L8Q7 609 aaKnown RBP7.57□□□□□ -1.2
VPS53-213ENST00000572334 ANKRD54Q6NXT1 300 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 MOXD1Q6UVY6 613 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 BMP8AQ7Z5Y6 402 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 KSR1Q8IVT5 923 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 BLIDQ8IZY5 108 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 LRRC43Q8N309 656 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 RDM1Q8NG50 284 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 HELQQ8TDG4 1101 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 BCL7CQ8WUZ0 217 aaPredicted RBP7.57□□□□□ -1.2
VPS53-213ENST00000572334 PPP2R3CQ969Q6 453 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 MAP7D2Q96T17 732 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 CDCA3Q99618 268 aaPredicted RBP7.57□□□□□ -1.2
VPS53-213ENST00000572334 TCF25Q9BQ70 676 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 FDXACB1Q9BRP7 624 aaPredicted RBP7.57□□□□□ -1.2
VPS53-213ENST00000572334 TRAIPQ9BWF2 469 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 PHF7Q9BWX1 381 aaPredicted RBP7.57□□□□□ -1.2
VPS53-213ENST00000572334 VN1R3Q9BXE9 311 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 TEKT3Q9BXF9 490 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 UPF3BQ9BZI7 483 aaKnown RBP7.57□□□□□ -1.2
VPS53-213ENST00000572334 TM6SF1Q9BZW5 370 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 IFT122Q9HBG6 1241 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 KCNMB3Q9NPA1 279 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 AAASQ9NRG9 546 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 NRBP2Q9NSY0 501 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 GJB4Q9NTQ9 266 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 DAXXQ9UER7 740 aaPredicted RBP7.57□□□□□ -1.2
VPS53-213ENST00000572334 VAV3Q9UKW4 847 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 KCNJ14Q9UNX9 436 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 SAMM50Q9Y512 469 aa7.57□□□□□ -1.2
VPS53-213ENST00000572334 RIF1Q5UIP0 2472 aaKnown RBP7.56□□□□□ -1.2
VPS53-213ENST00000572334 C2orf71A6NGG8 1288 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 NT5C1B-RDH14C9J2C7 533 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 MAFO75444 373 aaPredicted RBP7.56□□□□□ -1.2
VPS53-213ENST00000572334 REC8O95072 547 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 DEXIO95424 95 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 CTDNEP1O95476 244 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 EOMESO95936 686 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 ZSCAN20P17040 1043 aaPredicted RBP7.56□□□□□ -1.2
VPS53-213ENST00000572334 TMOD1P28289 359 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 TECP42680 631 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 PHKA2P46019 1235 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 AFF1P51825 1210 aaKnown RBP7.56□□□□□ -1.2
VPS53-213ENST00000572334 NPEPPSP55786 919 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 SSRP1Q08945 709 aaKnown RBP7.56□□□□□ -1.2
VPS53-213ENST00000572334 TBC1D8BQ0IIM8 1120 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 SCRN1Q12765 414 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 PPP2R5CQ13362 524 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 CSPP1Q1MSJ5 1256 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 INF2Q27J81 1249 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 MTERF2Q49AM1 385 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 XKR3Q5GH77 459 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 PLA2G4FQ68DD2 849 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 TRIM67Q6ZTA4 783 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 MIER3Q7Z3K6 550 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 ALYREFQ86V81 257 aaKnown RBP7.56□□□□□ -1.2
VPS53-213ENST00000572334 ZNF710Q8N1W2 664 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 PRSS33Q8NF86 280 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 OXER1Q8TDS5 423 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 MICAL1Q8TDZ2 1067 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 HAS1Q92839 578 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 LPPQ93052 612 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 ASIC4Q96FT7 647 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 RPGRIP1Q96KN7 1286 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 ZNF558Q96NG5 402 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 PHOX2BQ99453 314 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 PHF20Q9BVI0 1012 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 NRDE2Q9H7Z3 1164 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 MINDY3Q9H8M7 445 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 NGRNQ9NPE2 291 aaKnown RBP7.56□□□□□ -1.2
VPS53-213ENST00000572334 SEPT9Q9UHD8 586 aaPredicted RBP7.56□□□□□ -1.2
VPS53-213ENST00000572334 HCFC2Q9Y5Z7 792 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 VWA8A3KMH1 1905 aa7.56□□□□□ -1.2
VPS53-213ENST00000572334 VPS13AQ96RL7 3174 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 FAM186AA6NE01 2351 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 CFAP54Q96N23 3096 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 FAM205CA6NFA0 338 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 TMEM221A6NGB7 291 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 M0R296 226 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 ZBTB39O15060 712 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 HOXA2O43364 376 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 CLASP2O75122 1294 aaKnown RBP7.55□□□□□ -1.2
VPS53-213ENST00000572334 ZNF623O75123 536 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 OFD1O75665 1012 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 HOXA11P31270 313 aaPredicted RBP7.55□□□□□ -1.2
VPS53-213ENST00000572334 BCAR1P56945 870 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms