RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 C5orf67F2Z3F1 127 aa22.43■■□□□ 1.18
NUP88-204ENST00000572290 PDIA5Q14554 519 aa22.43■■□□□ 1.18
NUP88-204ENST00000572290 SKIV2LQ15477 1246 aaKnown RBP22.43■■□□□ 1.18
NUP88-204ENST00000572290 FAM102BQ5T8I3 360 aa22.43■■□□□ 1.18
NUP88-204ENST00000572290 CATSPER4Q7RTX7 472 aa22.43■■□□□ 1.18
NUP88-204ENST00000572290 RAB34Q9BZG1 259 aa22.43■■□□□ 1.18
NUP88-204ENST00000572290 DACT1Q9NYF0 836 aa22.43■■□□□ 1.18
NUP88-204ENST00000572290 TBKBP1A7MCY6 615 aa22.42■■□□□ 1.18
NUP88-204ENST00000572290 MUTP22033 750 aa22.42■■□□□ 1.18
NUP88-204ENST00000572290 MXD4Q14582 209 aaPredicted RBP22.42■■□□□ 1.18
NUP88-204ENST00000572290 PTPROQ16827 1216 aa22.42■■□□□ 1.18
NUP88-204ENST00000572290 POTEGQ6S5H5 508 aa22.42■■□□□ 1.18
NUP88-204ENST00000572290 SRGAP1Q7Z6B7 1085 aa22.42■■□□□ 1.18
NUP88-204ENST00000572290 ECHDC2Q86YB7 292 aa22.42■■□□□ 1.18
NUP88-204ENST00000572290 RNF149Q8NC42 400 aa22.42■■□□□ 1.18
NUP88-204ENST00000572290 C11orf84Q9BUA3 381 aaPredicted RBP22.42■■□□□ 1.18
NUP88-204ENST00000572290 THEGQ9P2T0 379 aa22.42■■□□□ 1.18
NUP88-204ENST00000572290 DBR1Q9UK59 544 aaKnown RBP22.42■■□□□ 1.18
NUP88-204ENST00000572290 STK24Q9Y6E0 443 aa22.42■■□□□ 1.18
NUP88-204ENST00000572290 A0A0U1RQF3 1178 aa22.41■■□□□ 1.18
NUP88-204ENST00000572290 HOXA2O43364 376 aa22.41■■□□□ 1.18
NUP88-204ENST00000572290 USO1O60763 962 aaKnown RBP22.41■■□□□ 1.18
NUP88-204ENST00000572290 FGFR1P11362 822 aa22.41■■□□□ 1.18
NUP88-204ENST00000572290 CCT6AP40227 531 aaKnown RBP22.41■■□□□ 1.18
NUP88-204ENST00000572290 PRPHP41219 470 aa22.41■■□□□ 1.18
NUP88-204ENST00000572290 DTHD1Q6ZMT9 781 aa22.41■■□□□ 1.18
NUP88-204ENST00000572290 IGSF22Q8N9C0 903 aa22.41■■□□□ 1.18
NUP88-204ENST00000572290 MRPL38Q96DV4 380 aaKnown RBP22.41■■□□□ 1.18
NUP88-204ENST00000572290 PLVAPQ9BX97 442 aa22.41■■□□□ 1.18
NUP88-204ENST00000572290 PIN4Q9Y237 131 aaKnown RBP22.41■■□□□ 1.18
NUP88-204ENST00000572290 EYSQ5T1H1 3165 aa22.41■■□□□ 1.18
NUP88-204ENST00000572290 ARL2P36404 184 aa22.4■■□□□ 1.18
NUP88-204ENST00000572290 PHKA2P46019 1235 aa22.4■■□□□ 1.18
NUP88-204ENST00000572290 TFDP1Q14186 410 aa22.4■■□□□ 1.18
NUP88-204ENST00000572290 TWF2Q6IBS0 349 aaKnown RBP22.4■■□□□ 1.18
NUP88-204ENST00000572290 RNF169Q8NCN4 708 aa22.4■■□□□ 1.18
NUP88-204ENST00000572290 TMEM117Q9H0C3 514 aa22.4■■□□□ 1.18
NUP88-204ENST00000572290 EOMESO95936 686 aa22.39■■□□□ 1.17
NUP88-204ENST00000572290 PDCP20941 246 aa22.39■■□□□ 1.17
NUP88-204ENST00000572290 SPOUT1Q5T280 376 aaKnown RBP22.39■■□□□ 1.17
NUP88-204ENST00000572290 ASAP3Q8TDY4 903 aa22.39■■□□□ 1.17
NUP88-204ENST00000572290 SNX29Q8TEQ0 813 aa22.39■■□□□ 1.17
NUP88-204ENST00000572290 TRAIPQ9BWF2 469 aa22.39■■□□□ 1.17
NUP88-204ENST00000572290 MINDY3Q9H8M7 445 aa22.39■■□□□ 1.17
NUP88-204ENST00000572290 TTC3P53804 2025 aa22.39■■□□□ 1.17
NUP88-204ENST00000572290 EVPLQ92817 2033 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 VPS37CA5D8V6 355 aaPredicted RBP22.38■■□□□ 1.17
NUP88-204ENST00000572290 ARHGEF35A5YM69 484 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 K7ELQ4 463 aaPredicted RBP22.38■■□□□ 1.17
NUP88-204ENST00000572290 PTENP60484 403 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 ATP2C1P98194 919 aaPredicted RBP22.38■■□□□ 1.17
NUP88-204ENST00000572290 POU5F1BQ06416 359 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 IL17AQ16552 155 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 ECM1Q16610 540 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 NAALADL2Q58DX5 795 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 KRT79Q5XKE5 535 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 MAEAQ7L5Y9 396 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 BRAPQ7Z569 592 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 ZNF598Q86UK7 904 aaKnown RBP22.38■■□□□ 1.17
NUP88-204ENST00000572290 ABI1Q8IZP0 508 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 MCPH1Q8NEM0 835 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 ATXN2LQ8WWM7 1075 aaKnown RBP22.38■■□□□ 1.17
NUP88-204ENST00000572290 P2RX5Q93086 422 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 INTS4Q96HW7 963 aaKnown RBP22.38■■□□□ 1.17
NUP88-204ENST00000572290 CASD1Q96PB1 797 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 LMAN2LQ9H0V9 348 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 POLR3FQ9H1D9 316 aaPredicted RBP22.38■■□□□ 1.17
NUP88-204ENST00000572290 AGPAT5Q9NUQ2 364 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 RNF19AQ9NV58 838 aa22.38■■□□□ 1.17
NUP88-204ENST00000572290 WDR81Q562E7 1941 aa22.37■■□□□ 1.17
NUP88-204ENST00000572290 GRM6O15303 877 aa22.37■■□□□ 1.17
NUP88-204ENST00000572290 SKIP12755 728 aa22.37■■□□□ 1.17
NUP88-204ENST00000572290 GLRA2P23416 452 aa22.37■■□□□ 1.17
NUP88-204ENST00000572290 CAPSQ13938 189 aa22.37■■□□□ 1.17
NUP88-204ENST00000572290 TIGD5Q53EQ6 642 aa22.37■■□□□ 1.17
NUP88-204ENST00000572290 PADI6Q6TGC4 694 aa22.37■■□□□ 1.17
NUP88-204ENST00000572290 IFNLR1Q8IU57 520 aaPredicted RBP22.37■■□□□ 1.17
NUP88-204ENST00000572290 GPRC5CQ9NQ84 441 aa22.37■■□□□ 1.17
NUP88-204ENST00000572290 AAASQ9NRG9 546 aa22.37■■□□□ 1.17
NUP88-204ENST00000572290 FAM105AQ9NUU6 356 aa22.37■■□□□ 1.17
NUP88-204ENST00000572290 TYW1Q9NV66 732 aaKnown RBP22.37■■□□□ 1.17
NUP88-204ENST00000572290 KIAA1024Q9UPX6 916 aa22.37■■□□□ 1.17
NUP88-204ENST00000572290 PP2D1A8MPX8 630 aa22.36■■□□□ 1.17
NUP88-204ENST00000572290 ATF7P17544 494 aaPredicted RBP22.36■■□□□ 1.17
NUP88-204ENST00000572290 RAB27AP51159 221 aa22.36■■□□□ 1.17
NUP88-204ENST00000572290 PCBP1Q15365 356 aaKnown RBP eCLIP22.36■■□□□ 1.17
NUP88-204ENST00000572290 KLHL23Q8NBE8 558 aa22.36■■□□□ 1.17
NUP88-204ENST00000572290 ALG13Q9NP73 1137 aaKnown RBP22.36■■□□□ 1.17
NUP88-204ENST00000572290 DDX19AQ9NUU7 478 aaKnown RBP22.36■■□□□ 1.17
NUP88-204ENST00000572290 COG5Q9UP83 839 aa22.36■■□□□ 1.17
NUP88-204ENST00000572290 PLAGL2Q9UPG8 496 aa22.36■■□□□ 1.17
NUP88-204ENST00000572290 PCDHB12Q9Y5F1 795 aa22.36■■□□□ 1.17
NUP88-204ENST00000572290 COL4A4P53420 1690 aaPredicted RBP22.36■■□□□ 1.17
NUP88-204ENST00000572290 INO80B-WBP1J3KQ70 363 aa22.35■■□□□ 1.17
NUP88-204ENST00000572290 ERLIN2O94905 339 aa22.35■■□□□ 1.17
NUP88-204ENST00000572290 CYP11B2P19099 503 aa22.35■■□□□ 1.17
NUP88-204ENST00000572290 MRPS5P82675 430 aaKnown RBP22.35■■□□□ 1.17
NUP88-204ENST00000572290 CLLU1OSQ5K130 101 aa22.35■■□□□ 1.17
NUP88-204ENST00000572290 LRRC43Q8N309 656 aa22.35■■□□□ 1.17
NUP88-204ENST00000572290 NFKBIZQ9BYH8 718 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms