RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 GRIN1Q05586 938 aa22.88■■□□□ 1.25
VPS53-210ENST00000571456 FAM26DQ5JW98 314 aa22.88■■□□□ 1.25
VPS53-210ENST00000571456 AXDND1Q5T1B0 1012 aaPredicted RBP22.88■■□□□ 1.25
VPS53-210ENST00000571456 PLA2G4FQ68DD2 849 aa22.88■■□□□ 1.25
VPS53-210ENST00000571456 EFCAB12Q6NXP0 572 aa22.88■■□□□ 1.25
VPS53-210ENST00000571456 METTL13Q8N6R0 699 aa22.88■■□□□ 1.25
VPS53-210ENST00000571456 LINC01465Q8N7H1 131 aa22.88■■□□□ 1.25
VPS53-210ENST00000571456 PIGOQ8TEQ8 1089 aa22.88■■□□□ 1.25
VPS53-210ENST00000571456 PPP1R13LQ8WUF5 828 aa22.88■■□□□ 1.25
VPS53-210ENST00000571456 DHX38Q92620 1227 aaKnown RBP22.88■■□□□ 1.25
VPS53-210ENST00000571456 CLIC6Q96NY7 704 aa22.88■■□□□ 1.25
VPS53-210ENST00000571456 TIPINQ9BVW5 301 aa22.88■■□□□ 1.25
VPS53-210ENST00000571456 ATP6V0A4Q9HBG4 840 aa22.88■■□□□ 1.25
VPS53-210ENST00000571456 FAM13BQ9NYF5 915 aa22.88■■□□□ 1.25
VPS53-210ENST00000571456 CACNA1AO00555 2505 aa22.87■■□□□ 1.25
VPS53-210ENST00000571456 TET1Q8NFU7 2136 aa22.87■■□□□ 1.25
VPS53-210ENST00000571456 ASAP2O43150 1006 aa22.87■■□□□ 1.25
VPS53-210ENST00000571456 NPEPPSP55786 919 aa22.87■■□□□ 1.25
VPS53-210ENST00000571456 LRRC8DQ7L1W4 858 aa22.87■■□□□ 1.25
VPS53-210ENST00000571456 HERC6Q8IVU3 1022 aa22.87■■□□□ 1.25
VPS53-210ENST00000571456 KIAA0319LQ8IZA0 1049 aa22.87■■□□□ 1.25
VPS53-210ENST00000571456 EPSTI1Q96J88 318 aa22.87■■□□□ 1.25
VPS53-210ENST00000571456 PNMA5Q96PV4 448 aa22.87■■□□□ 1.25
VPS53-210ENST00000571456 MTRQ99707 1265 aa22.87■■□□□ 1.25
VPS53-210ENST00000571456 CUEDC2Q9H467 287 aa22.87■■□□□ 1.25
VPS53-210ENST00000571456 LMCD1Q9NZU5 365 aa22.87■■□□□ 1.25
VPS53-210ENST00000571456 CFAP54Q96N23 3096 aa22.86■■□□□ 1.25
VPS53-210ENST00000571456 RSPH10B2B2RC85 870 aa22.86■■□□□ 1.25
VPS53-210ENST00000571456 RSPH10BP0C881 870 aa22.86■■□□□ 1.25
VPS53-210ENST00000571456 EMC2Q15006 297 aa22.86■■□□□ 1.25
VPS53-210ENST00000571456 ECM1Q16610 540 aa22.86■■□□□ 1.25
VPS53-210ENST00000571456 DNAJB3Q8WWF6 145 aa22.86■■□□□ 1.25
VPS53-210ENST00000571456 BHMT2Q9H2M3 363 aa22.86■■□□□ 1.25
VPS53-210ENST00000571456 UBE2ZQ9H832 354 aaPredicted RBP22.86■■□□□ 1.25
VPS53-210ENST00000571456 KCNG1Q9UIX4 513 aa22.86■■□□□ 1.25
VPS53-210ENST00000571456 USP34Q70CQ2 3546 aa22.85■■□□□ 1.25
VPS53-210ENST00000571456 A0A1W2PQ27 194 aa22.85■■□□□ 1.25
VPS53-210ENST00000571456 A0A1W2PQ64 194 aa22.85■■□□□ 1.25
VPS53-210ENST00000571456 A0A1W2PQD8 194 aa22.85■■□□□ 1.25
VPS53-210ENST00000571456 IQCF3P0C7M6 154 aa22.85■■□□□ 1.25
VPS53-210ENST00000571456 CYP11B2P19099 503 aa22.85■■□□□ 1.25
VPS53-210ENST00000571456 CMA1P23946 247 aa22.85■■□□□ 1.25
VPS53-210ENST00000571456 MRPS6P82932 125 aaKnown RBP22.85■■□□□ 1.25
VPS53-210ENST00000571456 MXD4Q14582 209 aaPredicted RBP22.85■■□□□ 1.25
VPS53-210ENST00000571456 ZRSR1Q15695 479 aaKnown RBP22.85■■□□□ 1.25
VPS53-210ENST00000571456 LEXMQ3ZCV2 418 aa22.85■■□□□ 1.25
VPS53-210ENST00000571456 ODR4Q5SWX8 454 aa22.85■■□□□ 1.25
VPS53-210ENST00000571456 RRAGBQ5VZM2 374 aa22.85■■□□□ 1.25
VPS53-210ENST00000571456 PADI6Q6TGC4 694 aa22.85■■□□□ 1.25
VPS53-210ENST00000571456 RUFY4Q6ZNE9 571 aa22.85■■□□□ 1.25
VPS53-210ENST00000571456 SYT2Q8N9I0 419 aaPredicted RBP22.85■■□□□ 1.25
VPS53-210ENST00000571456 SUGCTQ9HAC7 445 aa22.85■■□□□ 1.25
VPS53-210ENST00000571456 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.84■■□□□ 1.25
VPS53-210ENST00000571456 TMEM150BA6NC51 233 aa22.84■■□□□ 1.25
VPS53-210ENST00000571456 ZBTB39O15060 712 aa22.84■■□□□ 1.25
VPS53-210ENST00000571456 PLCG1P19174 1290 aa22.84■■□□□ 1.25
VPS53-210ENST00000571456 KARSQ15046 597 aaKnown RBP22.84■■□□□ 1.25
VPS53-210ENST00000571456 RESP18Q5W5W9 173 aa22.84■■□□□ 1.25
VPS53-210ENST00000571456 SPRED2Q7Z698 418 aa22.84■■□□□ 1.25
VPS53-210ENST00000571456 ZNF410Q86VK4 478 aa22.84■■□□□ 1.25
VPS53-210ENST00000571456 PSPC1Q8WXF1 523 aaKnown RBP22.84■■□□□ 1.25
VPS53-210ENST00000571456 LRRC27Q9C0I9 530 aa22.84■■□□□ 1.25
VPS53-210ENST00000571456 FAM49AQ9H0Q0 323 aaPredicted RBP22.84■■□□□ 1.25
VPS53-210ENST00000571456 MAGEF1Q9HAY2 307 aa22.84■■□□□ 1.25
VPS53-210ENST00000571456 AKT3Q9Y243 479 aa22.84■■□□□ 1.25
VPS53-210ENST00000571456 TRPV2Q9Y5S1 764 aa22.84■■□□□ 1.25
VPS53-210ENST00000571456 PTPRSQ13332 1948 aa22.84■■□□□ 1.25
VPS53-210ENST00000571456 GOLGA6L4A6NEF3 574 aa22.83■■□□□ 1.25
VPS53-210ENST00000571456 E9PMD0 336 aa22.83■■□□□ 1.25
VPS53-210ENST00000571456 ZNF618Q5T7W0 954 aa22.83■■□□□ 1.25
VPS53-210ENST00000571456 SHC4Q6S5L8 630 aa22.83■■□□□ 1.25
VPS53-210ENST00000571456 IQUBQ8NA54 791 aa22.83■■□□□ 1.25
VPS53-210ENST00000571456 LARP4BQ92615 738 aaKnown RBP22.83■■□□□ 1.25
VPS53-210ENST00000571456 RAD54LQ92698 747 aa22.83■■□□□ 1.25
VPS53-210ENST00000571456 KIFAP3Q92845 792 aa22.83■■□□□ 1.25
VPS53-210ENST00000571456 WNT8BQ93098 351 aa22.83■■□□□ 1.25
VPS53-210ENST00000571456 CELF4Q9BZC1 486 aaKnown RBP22.83■■□□□ 1.25
VPS53-210ENST00000571456 DCXO43602 365 aa22.82■■□□□ 1.24
VPS53-210ENST00000571456 PLA2G4BP0C869 781 aa22.82■■□□□ 1.24
VPS53-210ENST00000571456 GUCY2CP25092 1073 aa22.82■■□□□ 1.24
VPS53-210ENST00000571456 CRYBB1P53674 252 aaPredicted RBP22.82■■□□□ 1.24
VPS53-210ENST00000571456 POU5F1BQ06416 359 aa22.82■■□□□ 1.24
VPS53-210ENST00000571456 MGAT3Q09327 533 aa22.82■■□□□ 1.24
VPS53-210ENST00000571456 SPECC1Q5M775 1068 aa22.82■■□□□ 1.24
VPS53-210ENST00000571456 CLEC17AQ6ZS10 378 aa22.82■■□□□ 1.24
VPS53-210ENST00000571456 USP49Q70CQ1 688 aa22.82■■□□□ 1.24
VPS53-210ENST00000571456 LRRC71Q8N4P6 559 aa22.82■■□□□ 1.24
VPS53-210ENST00000571456 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.82■■□□□ 1.24
VPS53-210ENST00000571456 GDPD5Q8WTR4 605 aa22.82■■□□□ 1.24
VPS53-210ENST00000571456 INO80BQ9C086 356 aaPredicted RBP22.82■■□□□ 1.24
VPS53-210ENST00000571456 C17orf75Q9HAS0 396 aa22.82■■□□□ 1.24
VPS53-210ENST00000571456 SUCLA2Q9P2R7 463 aaPredicted RBP22.82■■□□□ 1.24
VPS53-210ENST00000571456 USP25Q9UHP3 1055 aa22.82■■□□□ 1.24
VPS53-210ENST00000571456 FAM237AA0A1B0GTK4 181 aa22.81■■□□□ 1.24
VPS53-210ENST00000571456 USO1O60763 962 aaKnown RBP22.81■■□□□ 1.24
VPS53-210ENST00000571456 IL9P15248 144 aa22.81■■□□□ 1.24
VPS53-210ENST00000571456 KCNA5P22460 613 aa22.81■■□□□ 1.24
VPS53-210ENST00000571456 STAT6P42226 847 aa22.81■■□□□ 1.24
VPS53-210ENST00000571456 CLCN3P51790 818 aa22.81■■□□□ 1.24
VPS53-210ENST00000571456 SLC12A3P55017 1021 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms