RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 HOXA2O43364 376 aa13.62□□□□□ -0.23
CAPN3-220ENST00000569827 B4GALT3O60512 393 aa13.62□□□□□ -0.23
CAPN3-220ENST00000569827 GAS7O60861 476 aa13.62□□□□□ -0.23
CAPN3-220ENST00000569827 DARSP14868 501 aaKnown RBP13.62□□□□□ -0.23
CAPN3-220ENST00000569827 PPM1AP35813 382 aa13.62□□□□□ -0.23
CAPN3-220ENST00000569827 KSR1Q8IVT5 923 aa13.62□□□□□ -0.23
CAPN3-220ENST00000569827 VPS52Q8N1B4 723 aa13.62□□□□□ -0.23
CAPN3-220ENST00000569827 TMEM105Q8N8V8 129 aa13.62□□□□□ -0.23
CAPN3-220ENST00000569827 MRPL43Q8N983 215 aaKnown RBP13.62□□□□□ -0.23
CAPN3-220ENST00000569827 CASP10Q92851 521 aa13.62□□□□□ -0.23
CAPN3-220ENST00000569827 CCDC136Q96JN2 1154 aa13.62□□□□□ -0.23
CAPN3-220ENST00000569827 FAM167AQ96KS9 214 aa13.62□□□□□ -0.23
CAPN3-220ENST00000569827 RIPOR3Q96MK2 946 aa13.62□□□□□ -0.23
CAPN3-220ENST00000569827 JAKMIP1Q96N16 626 aaKnown RBP13.62□□□□□ -0.23
CAPN3-220ENST00000569827 SLC26A6Q9BXS9 759 aa13.62□□□□□ -0.23
CAPN3-220ENST00000569827 NCOA5Q9HCD5 579 aaKnown RBP13.62□□□□□ -0.23
CAPN3-220ENST00000569827 RNF216Q9NWF9 866 aaPredicted RBP13.62□□□□□ -0.23
CAPN3-220ENST00000569827 A0A087WZ62 844 aa13.61□□□□□ -0.23
CAPN3-220ENST00000569827 A0A0U1RQF3 1178 aa13.61□□□□□ -0.23
CAPN3-220ENST00000569827 TDP2O95551 362 aa13.61□□□□□ -0.23
CAPN3-220ENST00000569827 CXCL14O95715 111 aa13.61□□□□□ -0.23
CAPN3-220ENST00000569827 SSBP05455 408 aaKnown RBP eCLIP13.61□□□□□ -0.23
CAPN3-220ENST00000569827 TMOD1P28289 359 aa13.61□□□□□ -0.23
CAPN3-220ENST00000569827 CCT2P78371 535 aaKnown RBP13.61□□□□□ -0.23
CAPN3-220ENST00000569827 TBC1D8BQ0IIM8 1120 aa13.61□□□□□ -0.23
CAPN3-220ENST00000569827 BMP2KLQ5H9B9 411 aa13.61□□□□□ -0.23
CAPN3-220ENST00000569827 LRCH2Q5VUJ6 765 aa13.61□□□□□ -0.23
CAPN3-220ENST00000569827 TMEM169Q96HH4 297 aa13.61□□□□□ -0.23
CAPN3-220ENST00000569827 FDXACB1Q9BRP7 624 aaPredicted RBP13.61□□□□□ -0.23
CAPN3-220ENST00000569827 VN1R3Q9BXE9 311 aa13.61□□□□□ -0.23
CAPN3-220ENST00000569827 ZBP1Q9H171 429 aa13.61□□□□□ -0.23
CAPN3-220ENST00000569827 DNAJB4Q9UDY4 337 aa13.61□□□□□ -0.23
CAPN3-220ENST00000569827 LIMD1Q9UGP4 676 aa13.61□□□□□ -0.23
CAPN3-220ENST00000569827 NR2E1Q9Y466 385 aa13.61□□□□□ -0.23
CAPN3-220ENST00000569827 TRIP11Q15643 1979 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 GVINP1Q7Z2Y8 2422 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 FSD2A1L4K1 749 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 PRPF3O43395 683 aaKnown RBP13.6□□□□□ -0.23
CAPN3-220ENST00000569827 DTNBO60941 627 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 MYBP10242 640 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 HOXB8P17481 243 aaPredicted RBP13.6□□□□□ -0.23
CAPN3-220ENST00000569827 CIITAP33076 1130 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 PHKA2P46019 1235 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 MTMR3Q13615 1198 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 NTRK3Q16288 839 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 TPRNQ4KMQ1 711 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 PLA2G4FQ68DD2 849 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 TWF2Q6IBS0 349 aaKnown RBP13.6□□□□□ -0.23
CAPN3-220ENST00000569827 CES5AQ6NT32 575 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 TMC5Q6UXY8 1006 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 MIER3Q7Z3K6 550 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 CCDC12Q8WUD4 166 aaPredicted RBP13.6□□□□□ -0.23
CAPN3-220ENST00000569827 SLC5A5Q92911 643 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 LARP6Q9BRS8 491 aaKnown RBP13.6□□□□□ -0.23
CAPN3-220ENST00000569827 TEKT3Q9BXF9 490 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 ADAM7Q9H2U9 754 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 NRDE2Q9H7Z3 1164 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 NRBP2Q9NSY0 501 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 BMP2KQ9NSY1 1161 aaPredicted RBP13.6□□□□□ -0.23
CAPN3-220ENST00000569827 TBC1D13Q9NVG8 400 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 SORCS3Q9UPU3 1222 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 PIN4Q9Y237 131 aaKnown RBP13.6□□□□□ -0.23
CAPN3-220ENST00000569827 SNX14Q9Y5W7 946 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 MYH15Q9Y2K3 1946 aa13.6□□□□□ -0.23
CAPN3-220ENST00000569827 ST18O60284 1047 aa13.59□□□□□ -0.23
CAPN3-220ENST00000569827 CDC45O75419 566 aa13.59□□□□□ -0.23
CAPN3-220ENST00000569827 STBD1O95210 358 aa13.59□□□□□ -0.23
CAPN3-220ENST00000569827 GNA11P29992 359 aa13.59□□□□□ -0.23
CAPN3-220ENST00000569827 ALDH7A1P49419 539 aaKnown RBP13.59□□□□□ -0.23
CAPN3-220ENST00000569827 AFF1P51825 1210 aaKnown RBP13.59□□□□□ -0.23
CAPN3-220ENST00000569827 AKAP17AQ02040 695 aaKnown RBP13.59□□□□□ -0.23
CAPN3-220ENST00000569827 KRT32Q14532 448 aa13.59□□□□□ -0.23
CAPN3-220ENST00000569827 TARBP2Q15633 366 aaKnown RBP13.59□□□□□ -0.23
CAPN3-220ENST00000569827 TSGA10IPQ3SY00 556 aa13.59□□□□□ -0.23
CAPN3-220ENST00000569827 ASCL5Q7RTU5 278 aa13.59□□□□□ -0.23
CAPN3-220ENST00000569827 RHPN2Q8IUC4 686 aa13.59□□□□□ -0.23
CAPN3-220ENST00000569827 TEX2Q8IWB9 1127 aa13.59□□□□□ -0.23
CAPN3-220ENST00000569827 TDRD5Q8NAT2 981 aaKnown RBP13.59□□□□□ -0.23
CAPN3-220ENST00000569827 TBCKQ8TEA7 893 aa13.59□□□□□ -0.23
CAPN3-220ENST00000569827 SNX27Q96L92 541 aa13.59□□□□□ -0.23
CAPN3-220ENST00000569827 NLRP4Q96MN2 994 aa13.59□□□□□ -0.23
CAPN3-220ENST00000569827 CEP89Q96ST8 783 aa13.59□□□□□ -0.23
CAPN3-220ENST00000569827 PRRX2Q99811 253 aa13.59□□□□□ -0.23
CAPN3-220ENST00000569827 DBR1Q9UK59 544 aaKnown RBP13.59□□□□□ -0.23
CAPN3-220ENST00000569827 DMXL1Q9Y485 3027 aa13.59□□□□□ -0.23
CAPN3-220ENST00000569827 NID2Q14112 1375 aa13.58□□□□□ -0.23
CAPN3-220ENST00000569827 MIA3Q5JRA6 1907 aa13.58□□□□□ -0.23
CAPN3-220ENST00000569827 EP300Q09472 2414 aaPredicted RBP13.58□□□□□ -0.24
CAPN3-220ENST00000569827 CCDC196A0A1B0GTZ2 297 aa13.58□□□□□ -0.24
CAPN3-220ENST00000569827 GALR2O43603 387 aaPredicted RBP13.58□□□□□ -0.24
CAPN3-220ENST00000569827 PSMD10O75832 226 aa13.58□□□□□ -0.24
CAPN3-220ENST00000569827 SLC11A1P49279 550 aa13.58□□□□□ -0.24
CAPN3-220ENST00000569827 RCAN1P53805 252 aa13.58□□□□□ -0.24
CAPN3-220ENST00000569827 BLOC1S2Q6QNY1 142 aa13.58□□□□□ -0.24
CAPN3-220ENST00000569827 ZNF280BQ86YH2 543 aa13.58□□□□□ -0.24
CAPN3-220ENST00000569827 TMEM87AQ8NBN3 555 aa13.58□□□□□ -0.24
CAPN3-220ENST00000569827 IGSF21Q96ID5 467 aa13.58□□□□□ -0.24
CAPN3-220ENST00000569827 AIFM3Q96NN9 605 aa13.58□□□□□ -0.24
CAPN3-220ENST00000569827 MRPL9Q9BYD2 267 aaKnown RBP13.58□□□□□ -0.24
CAPN3-220ENST00000569827 GCOM2Q9BZD3 368 aaPredicted RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms