RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 ARHGAP42A6NI28 874 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 NMT1P30419 496 aaKnown RBP12.26□□□□□ -0.45
CLN3-238ENST00000569430 CHRNA3P32297 505 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 RWDD2BP57060 319 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 DCUN1D2Q6PH85 259 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 RHOT2Q8IXI1 618 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 CNBD1Q8NA66 436 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 CYTH2Q99418 400 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 ANO3Q9BYT9 981 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 TMOD2Q9NZR1 351 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 SCOCQ9UIL1 159 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.26□□□□□ -0.45
CLN3-238ENST00000569430 ATMINO43313 823 aaPredicted RBP12.25□□□□□ -0.45
CLN3-238ENST00000569430 MYBP10242 640 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 NQO1P15559 274 aaKnown RBP12.25□□□□□ -0.45
CLN3-238ENST00000569430 SATB1Q01826 763 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 FUT2Q10981 343 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 SLFN13Q68D06 897 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 KCNK18Q7Z418 384 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 TRIM59Q8IWR1 403 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 ERP27Q96DN0 273 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 FNBP1Q96RU3 617 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 OSBPL7Q9BZF2 842 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 BATF3Q9NR55 127 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 SOX5P35711 763 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 ELF3P78545 371 aaPredicted RBP12.25□□□□□ -0.45
CLN3-238ENST00000569430 PDIA5Q14554 519 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 ACCSLQ4AC99 568 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 RNF207Q6ZRF8 634 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 YTHDF3Q7Z739 585 aaKnown RBP12.25□□□□□ -0.45
CLN3-238ENST00000569430 SLC51AQ86UW1 340 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 ZNF34Q8IZ26 560 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 RPUSD2Q8IZ73 545 aaKnown RBP12.25□□□□□ -0.45
CLN3-238ENST00000569430 DTX3LQ8TDB6 740 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 GRK7Q8WTQ7 553 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 ABCF3Q9NUQ8 709 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 RGL1Q9NZL6 768 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 PJA2O43164 708 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 TTLL1O95922 423 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 CASP4P49662 377 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 GPC5P78333 572 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 WDR44Q5JSH3 913 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 CFAP157Q5JU67 520 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 FBXO11Q86XK2 927 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 PALM2Q8IXS6 379 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 SUPT20HQ8NEM7 779 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 BAP1Q92560 729 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 TATDN2Q93075 761 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 KDM4CQ9H3R0 1056 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 ATP6V0A4Q9HBG4 840 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 PARVGQ9HBI0 331 aa12.25□□□□□ -0.45
CLN3-238ENST00000569430 ALG13Q9NP73 1137 aaKnown RBP12.25□□□□□ -0.45
CLN3-238ENST00000569430 FAM196BA6NMK8 535 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 MIF4GDA9UHW6 222 aaKnown RBP12.24□□□□□ -0.45
CLN3-238ENST00000569430 SHBGP04278 402 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 CCND1P24385 295 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 IRX1P78414 480 aaPredicted RBP12.24□□□□□ -0.45
CLN3-238ENST00000569430 DHX34Q14147 1143 aaKnown RBP12.24□□□□□ -0.45
CLN3-238ENST00000569430 LIN9Q5TKA1 542 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 PHLDB3Q6NSJ2 640 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 KIAA0825Q8IV33 1275 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 HAUS1Q96CS2 278 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 SPZ1Q9BXG8 430 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 LARSQ9P2J5 1176 aaKnown RBP12.24□□□□□ -0.45
CLN3-238ENST00000569430 SUCLA2Q9P2R7 463 aaPredicted RBP12.24□□□□□ -0.45
CLN3-238ENST00000569430 SRP68Q9UHB9 627 aaKnown RBP12.24□□□□□ -0.45
CLN3-238ENST00000569430 CYTH3O43739 400 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 SKIP12755 728 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 FECHP22830 423 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 KCNMA1Q12791 1236 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 MAIP1Q8WWC4 291 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 SYN2Q92777 582 aaPredicted RBP12.24□□□□□ -0.45
CLN3-238ENST00000569430 INPP4AQ96PE3 977 aaPredicted RBP12.24□□□□□ -0.45
CLN3-238ENST00000569430 SAYSD1Q9NPB0 183 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 CNOT8Q9UFF9 292 aaKnown RBP12.24□□□□□ -0.45
CLN3-238ENST00000569430 ANAPC7Q9UJX3 599 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 TNS3Q68CZ2 1445 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 GOLGA8SH3BPF8 625 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 GOLGA8MH3BSY2 632 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 CLDN3O15551 220 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 COPS2P61201 443 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 MTM1Q13496 603 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 ARHGAP24Q8N264 748 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 ACTRT1Q8TDG2 376 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 REEP2Q9BRK0 252 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 THAP2Q9H0W7 228 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 BLOC1S4Q9NUP1 217 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 SERPINB13Q9UIV8 391 aa12.24□□□□□ -0.45
CLN3-238ENST00000569430 TNNI1P19237 187 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 PON1P27169 355 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 KCNJ2P63252 427 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 KRT17Q04695 432 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 FRMD5Q7Z6J6 570 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 NGLY1Q96IV0 654 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 TRPC6Q9Y210 931 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 KDM3BQ7LBC6 1761 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 CFAP69A5D8W1 941 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 NKRFO15226 690 aaKnown RBP eCLIP12.23□□□□□ -0.45
CLN3-238ENST00000569430 KCNQ2O43526 872 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 HSPA1LP34931 641 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms