RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 RRN3P2A6NIE6 340 aa12.76□□□□□ -0.37
CLN3-226ENST00000567160 PIK3CDO00329 1044 aa12.76□□□□□ -0.37
CLN3-226ENST00000567160 PI15O43692 258 aa12.76□□□□□ -0.37
CLN3-226ENST00000567160 RFX1P22670 979 aa12.76□□□□□ -0.37
CLN3-226ENST00000567160 DDIT3P35638 169 aa12.76□□□□□ -0.37
CLN3-226ENST00000567160 PPM1AP35813 382 aa12.76□□□□□ -0.37
CLN3-226ENST00000567160 TCF7P36402 384 aaPredicted RBP12.76□□□□□ -0.37
CLN3-226ENST00000567160 BMS1Q14692 1282 aaKnown RBP12.76□□□□□ -0.37
CLN3-226ENST00000567160 ATAT1Q5SQI0 421 aa12.76□□□□□ -0.37
CLN3-226ENST00000567160 TMC7Q7Z402 723 aa12.76□□□□□ -0.37
CLN3-226ENST00000567160 TNPO1Q92973 898 aaKnown RBP12.76□□□□□ -0.37
CLN3-226ENST00000567160 ACSF2Q96CM8 615 aaPredicted RBP12.76□□□□□ -0.37
CLN3-226ENST00000567160 FAM49AQ9H0Q0 323 aaPredicted RBP12.76□□□□□ -0.37
CLN3-226ENST00000567160 CYP26B1Q9NR63 512 aa12.76□□□□□ -0.37
CLN3-226ENST00000567160 C1orf112Q9NSG2 853 aa12.76□□□□□ -0.37
CLN3-226ENST00000567160 IGSF9BQ9UPX0 1349 aa12.76□□□□□ -0.37
CLN3-226ENST00000567160 CCDC194A0A1B0GVG4 234 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 DENND3A2RUS2 1198 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 FAM205CA6NFA0 338 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 SPDYE3A6NKU9 549 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 HIDE1A8MVS5 230 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 STK25O00506 426 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 ZSCAN22P10073 491 aaPredicted RBP12.75□□□□□ -0.37
CLN3-226ENST00000567160 NPR3P17342 541 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 MARK3P27448 753 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 CLK2P49760 499 aaKnown RBP12.75□□□□□ -0.37
CLN3-226ENST00000567160 TDGQ13569 410 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 SMC1AQ14683 1233 aaKnown RBP12.75□□□□□ -0.37
CLN3-226ENST00000567160 ST3GAL2Q16842 350 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 RSPO4Q2I0M5 234 aaPredicted RBP12.75□□□□□ -0.37
CLN3-226ENST00000567160 EARS2Q5JPH6 523 aaKnown RBP12.75□□□□□ -0.37
CLN3-226ENST00000567160 ODR4Q5SWX8 454 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 KIAA1841Q6NSI8 718 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 PIK3AP1Q6ZUJ8 805 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 SIX5Q8N196 739 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 GLG1Q92896 1179 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 FOXP1Q9H334 677 aaPredicted RBP12.75□□□□□ -0.37
CLN3-226ENST00000567160 TYW1Q9NV66 732 aaKnown RBP12.75□□□□□ -0.37
CLN3-226ENST00000567160 DZANK1Q9NVP4 752 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 CDH22Q9UJ99 828 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 HCFC2Q9Y5Z7 792 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 R4GN57 208 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 FRYLO94915 3013 aa12.75□□□□□ -0.37
CLN3-226ENST00000567160 SPTBN2O15020 2390 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 FANCMQ8IYD8 2048 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 FRMPD4Q14CM0 1322 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 M0R2N6 131 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 EOMESO95936 686 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 IGBP1P78318 339 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 MRPS9P82933 396 aaKnown RBP12.74□□□□□ -0.37
CLN3-226ENST00000567160 NFX1Q12986 1120 aaKnown RBP12.74□□□□□ -0.37
CLN3-226ENST00000567160 SEMA3FQ13275 785 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 AP3B2Q13367 1082 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 MARCH8Q5T0T0 291 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 XRRA1Q6P2D8 792 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 KRT25Q7Z3Z0 450 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 NLRX1Q86UT6 975 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 TMEM87AQ8NBN3 555 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 SEPT1Q8WYJ6 367 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 TNFRSF25Q93038 417 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 ANO3Q9BYT9 981 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 CELF4Q9BZC1 486 aaKnown RBP12.74□□□□□ -0.37
CLN3-226ENST00000567160 SMARCAD1Q9H4L7 1026 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 ERVK-5Q9HDB9 667 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 RTEL1Q9NZ71 1219 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 DUSP12Q9UNI6 340 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 ZDHHC9Q9Y397 364 aa12.74□□□□□ -0.37
CLN3-226ENST00000567160 MAP1BP46821 2468 aaKnown RBP12.74□□□□□ -0.37
CLN3-226ENST00000567160 KDM3AQ9Y4C1 1321 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 F13A1P00488 732 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 FOSP01100 380 aaPredicted RBP12.73□□□□□ -0.37
CLN3-226ENST00000567160 U2AF2P26368 475 aaKnown RBP eCLIP12.73□□□□□ -0.37
CLN3-226ENST00000567160 NUCB2P80303 420 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 TMEM62Q0P6H9 643 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 RESTQ13127 1097 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 NONOQ15233 471 aaKnown RBP eCLIP12.73□□□□□ -0.37
CLN3-226ENST00000567160 INF2Q27J81 1249 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 FOXD4L6Q3SYB3 417 aaPredicted RBP12.73□□□□□ -0.37
CLN3-226ENST00000567160 RARS2Q5T160 578 aaKnown RBP12.73□□□□□ -0.37
CLN3-226ENST00000567160 FAM102BQ5T8I3 360 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 KIAA0319Q5VV43 1072 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 FOXD4L3Q6VB84 417 aaPredicted RBP12.73□□□□□ -0.37
CLN3-226ENST00000567160 SLC24A5Q71RS6 500 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 OTOP3Q7RTS5 596 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 NOSTRINQ8IVI9 506 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 NME8Q8N427 588 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 GPR161Q8N6U8 529 aaKnown RBP12.73□□□□□ -0.37
CLN3-226ENST00000567160 CDHR1Q96JP9 859 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 ZNF558Q96NG5 402 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 TMX1Q9H3N1 280 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 CWH43Q9H720 699 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 ATP6V0A4Q9HBG4 840 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 ZFHX4Q86UP3 3567 aa12.73□□□□□ -0.37
CLN3-226ENST00000567160 DENND4AQ7Z401 1863 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 BAHCC1Q9P281 2608 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 HOXA2O43364 376 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 PDIA4P13667 645 aaKnown RBP12.72□□□□□ -0.37
CLN3-226ENST00000567160 ATP2B1P20020 1258 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 CA8P35219 290 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 KRT76Q01546 638 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms