RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CIZ1Q9ULV3 898 aaPredicted RBP21.71■■□□□ 1.07
CLN3-225ENST00000566824 ST3GAL5Q9UNP4 418 aa21.71■■□□□ 1.07
CLN3-225ENST00000566824 ATP6V1DQ9Y5K8 247 aa21.71■■□□□ 1.07
CLN3-225ENST00000566824 SQORQ9Y6N5 450 aa21.71■■□□□ 1.07
CLN3-225ENST00000566824 RPS6KA5O75582 802 aa21.7■■□□□ 1.06
CLN3-225ENST00000566824 ACTN1P12814 892 aa21.7■■□□□ 1.06
CLN3-225ENST00000566824 EIF4BP23588 611 aaKnown RBP21.7■■□□□ 1.06
CLN3-225ENST00000566824 WDR5P61964 334 aaKnown RBP21.7■■□□□ 1.06
CLN3-225ENST00000566824 CACNB1Q02641 598 aaPredicted RBP21.7■■□□□ 1.06
CLN3-225ENST00000566824 PAK2Q13177 524 aa21.7■■□□□ 1.06
CLN3-225ENST00000566824 RNF149Q8NC42 400 aa21.7■■□□□ 1.06
CLN3-225ENST00000566824 MCPH1Q8NEM0 835 aa21.7■■□□□ 1.06
CLN3-225ENST00000566824 A0A1W2PPC1 479 aa21.69■■□□□ 1.06
CLN3-225ENST00000566824 HIP1RO75146 1068 aa21.69■■□□□ 1.06
CLN3-225ENST00000566824 NFX1Q12986 1120 aaKnown RBP21.69■■□□□ 1.06
CLN3-225ENST00000566824 IKBKEQ14164 716 aa21.69■■□□□ 1.06
CLN3-225ENST00000566824 TPRNQ4KMQ1 711 aa21.69■■□□□ 1.06
CLN3-225ENST00000566824 RRAGBQ5VZM2 374 aa21.69■■□□□ 1.06
CLN3-225ENST00000566824 RESP18Q5W5W9 173 aa21.69■■□□□ 1.06
CLN3-225ENST00000566824 ZNF410Q86VK4 478 aa21.69■■□□□ 1.06
CLN3-225ENST00000566824 ABHD14A-ACY1A0A1B0GW23 586 aa21.68■■□□□ 1.06
CLN3-225ENST00000566824 BAIAP3O94812 1187 aa21.68■■□□□ 1.06
CLN3-225ENST00000566824 GPBP1Q86WP2 473 aa21.68■■□□□ 1.06
CLN3-225ENST00000566824 KCTD17Q8N5Z5 321 aa21.68■■□□□ 1.06
CLN3-225ENST00000566824 USP38Q8NB14 1042 aa21.68■■□□□ 1.06
CLN3-225ENST00000566824 GCOM2Q9BZD3 368 aaPredicted RBP21.68■■□□□ 1.06
CLN3-225ENST00000566824 CHMP5Q9NZZ3 219 aa21.68■■□□□ 1.06
CLN3-225ENST00000566824 CCDC39Q9UFE4 941 aa21.68■■□□□ 1.06
CLN3-225ENST00000566824 SLC4A7Q9Y6M7 1214 aa21.68■■□□□ 1.06
CLN3-225ENST00000566824 SFI1A8K8P3 1242 aa21.67■■□□□ 1.06
CLN3-225ENST00000566824 ENPP3O14638 875 aa21.67■■□□□ 1.06
CLN3-225ENST00000566824 ASAP2O43150 1006 aa21.67■■□□□ 1.06
CLN3-225ENST00000566824 TXLNAP40222 546 aa21.67■■□□□ 1.06
CLN3-225ENST00000566824 MXD4Q14582 209 aaPredicted RBP21.67■■□□□ 1.06
CLN3-225ENST00000566824 E2F4Q16254 413 aa21.67■■□□□ 1.06
CLN3-225ENST00000566824 LARP4BQ92615 738 aaKnown RBP21.67■■□□□ 1.06
CLN3-225ENST00000566824 APBB2Q92870 758 aa21.67■■□□□ 1.06
CLN3-225ENST00000566824 IPO9Q96P70 1041 aaKnown RBP21.67■■□□□ 1.06
CLN3-225ENST00000566824 KIFC3Q9BVG8 833 aa21.67■■□□□ 1.06
CLN3-225ENST00000566824 TTC3P53804 2025 aa21.67■■□□□ 1.06
CLN3-225ENST00000566824 GUCY2CP25092 1073 aa21.66■■□□□ 1.06
CLN3-225ENST00000566824 RABGGTBP53611 331 aa21.66■■□□□ 1.06
CLN3-225ENST00000566824 PTENP60484 403 aa21.66■■□□□ 1.06
CLN3-225ENST00000566824 DSC3Q14574 896 aa21.66■■□□□ 1.06
CLN3-225ENST00000566824 LRIT3Q3SXY7 679 aa21.66■■□□□ 1.06
CLN3-225ENST00000566824 LRCH3Q96II8 777 aa21.66■■□□□ 1.06
CLN3-225ENST00000566824 SCAND2PQ9GZW5 306 aaPredicted RBP21.66■■□□□ 1.06
CLN3-225ENST00000566824 ADGRA3Q8IWK6 1321 aa21.66■■□□□ 1.06
CLN3-225ENST00000566824 LRRIQ4A6NIV6 560 aa21.65■■□□□ 1.06
CLN3-225ENST00000566824 GPR182O15218 404 aa21.65■■□□□ 1.06
CLN3-225ENST00000566824 PBX2P40425 430 aa21.65■■□□□ 1.06
CLN3-225ENST00000566824 STAT6P42226 847 aa21.65■■□□□ 1.06
CLN3-225ENST00000566824 CDC42EP1Q00587 391 aa21.65■■□□□ 1.06
CLN3-225ENST00000566824 FAM117BQ6P1L5 589 aa21.65■■□□□ 1.06
CLN3-225ENST00000566824 ZNF710Q8N1W2 664 aa21.65■■□□□ 1.06
CLN3-225ENST00000566824 STAMQ92783 540 aa21.65■■□□□ 1.06
CLN3-225ENST00000566824 REEP2Q9BRK0 252 aa21.65■■□□□ 1.06
CLN3-225ENST00000566824 STK17AQ9UEE5 414 aa21.65■■□□□ 1.06
CLN3-225ENST00000566824 A0A1B0GVL5 298 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 MYMKA6NI61 221 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 EDN1P05305 212 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 MYOGP15173 224 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 ATP2A2P16615 1042 aaKnown RBP21.64■■□□□ 1.05
CLN3-225ENST00000566824 PHKA2P46019 1235 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 KCNJ6P48051 423 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 MBTD1Q05BQ5 628 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 GIT2Q14161 759 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 AMHR2Q16671 573 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 ADALQ6DHV7 355 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 CCDC73Q6ZRK6 1079 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 IFNLR1Q8IU57 520 aaPredicted RBP21.64■■□□□ 1.05
CLN3-225ENST00000566824 KIFAP3Q92845 792 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 DHX58Q96C10 678 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 ADAM2Q99965 735 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 GOLPH3LQ9H4A5 285 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 USP20Q9Y2K6 914 aa21.64■■□□□ 1.05
CLN3-225ENST00000566824 TTLL13PA6NNM8 815 aa21.63■■□□□ 1.05
CLN3-225ENST00000566824 POLR2DO15514 142 aaKnown RBP21.63■■□□□ 1.05
CLN3-225ENST00000566824 POU5F1BQ06416 359 aa21.63■■□□□ 1.05
CLN3-225ENST00000566824 TFDP1Q14186 410 aa21.63■■□□□ 1.05
CLN3-225ENST00000566824 CDCA2Q69YH5 1023 aaPredicted RBP21.63■■□□□ 1.05
CLN3-225ENST00000566824 CATSPER4Q7RTX7 472 aa21.63■■□□□ 1.05
CLN3-225ENST00000566824 SRGAP1Q7Z6B7 1085 aa21.63■■□□□ 1.05
CLN3-225ENST00000566824 HERC6Q8IVU3 1022 aa21.63■■□□□ 1.05
CLN3-225ENST00000566824 MYOCDQ8IZQ8 938 aa21.63■■□□□ 1.05
CLN3-225ENST00000566824 TSPYL2Q9H2G4 693 aaPredicted RBP21.63■■□□□ 1.05
CLN3-225ENST00000566824 MTIF3Q9H2K0 278 aaKnown RBP21.63■■□□□ 1.05
CLN3-225ENST00000566824 COL4A6Q14031 1691 aa21.63■■□□□ 1.05
CLN3-225ENST00000566824 CHD9Q3L8U1 2897 aa21.62■■□□□ 1.05
CLN3-225ENST00000566824 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.62■■□□□ 1.05
CLN3-225ENST00000566824 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.62■■□□□ 1.05
CLN3-225ENST00000566824 INO80B-WBP1J3KQ70 363 aa21.62■■□□□ 1.05
CLN3-225ENST00000566824 B4GALT5O43286 388 aa21.62■■□□□ 1.05
CLN3-225ENST00000566824 PFKFB1P16118 471 aa21.62■■□□□ 1.05
CLN3-225ENST00000566824 IBSPP21815 317 aaPredicted RBP21.62■■□□□ 1.05
CLN3-225ENST00000566824 CMA1P23946 247 aa21.62■■□□□ 1.05
CLN3-225ENST00000566824 NAMPTP43490 491 aa21.62■■□□□ 1.05
CLN3-225ENST00000566824 NPTX2P47972 431 aa21.62■■□□□ 1.05
CLN3-225ENST00000566824 PEX3P56589 373 aa21.62■■□□□ 1.05
CLN3-225ENST00000566824 DYMQ7RTS9 669 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms