RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 KDM3AQ9Y4C1 1321 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 C19orf67A6NJJ6 358 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 PP2D1A8MPX8 630 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 STBD1O95210 358 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 LYPLA2O95372 231 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 MUTP22033 750 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 DNM2P50570 870 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 POLGP54098 1239 aaPredicted RBP19.21■□□□□ 0.67
CLN3-217ENST00000565354 NPEPPSP55786 919 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 NUCB2P80303 420 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 POTEGQ6S5H5 508 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 NME8Q8N427 588 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 LRRC71Q8N4P6 559 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 PIGOQ8TEQ8 1089 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 SLC7A3Q8WY07 619 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 AK8Q96MA6 479 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 YME1L1Q96TA2 773 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 ANKEF1Q9NU02 776 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 CFAP45Q9UL16 551 aa19.21■□□□□ 0.67
CLN3-217ENST00000565354 SPATA31C1P0DKV0 1188 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 NCLP19338 710 aaKnown RBP19.2■□□□□ 0.66
CLN3-217ENST00000565354 CDC25AP30304 524 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 LONP1P36776 959 aaKnown RBP19.2■□□□□ 0.66
CLN3-217ENST00000565354 RFC5P40937 340 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 NASPP49321 788 aaPredicted RBP19.2■□□□□ 0.66
CLN3-217ENST00000565354 CLCN3P51790 818 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 MRPS6P82932 125 aaKnown RBP19.2■□□□□ 0.66
CLN3-217ENST00000565354 TMEM62Q0P6H9 643 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 PTPAQ15257 358 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 TARBP2Q15633 366 aaKnown RBP19.2■□□□□ 0.66
CLN3-217ENST00000565354 ATL3Q6DD88 541 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 EP400NLQ6ZTU2 488 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 RPAINQ86UA6 219 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 ADHFE1Q8IWW8 467 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 TMEM192Q8IY95 271 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 TOP1MTQ969P6 601 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 NSUN3Q9H649 340 aaKnown RBP19.2■□□□□ 0.66
CLN3-217ENST00000565354 KIAA1024Q9UPX6 916 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 GINS2Q9Y248 185 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 TRPV2Q9Y5S1 764 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 CDY2AQ9Y6F7 541 aa19.2■□□□□ 0.66
CLN3-217ENST00000565354 A0A087WWV3 80 aa19.19■□□□□ 0.66
CLN3-217ENST00000565354 ZBTB39O15060 712 aa19.19■□□□□ 0.66
CLN3-217ENST00000565354 YEATS4O95619 227 aa19.19■□□□□ 0.66
CLN3-217ENST00000565354 XRCC6P12956 609 aaKnown RBP eCLIP19.19■□□□□ 0.66
CLN3-217ENST00000565354 UBA7P41226 1012 aa19.19■□□□□ 0.66
CLN3-217ENST00000565354 SLC39A14Q15043 492 aa19.19■□□□□ 0.66
CLN3-217ENST00000565354 CABP7Q86V35 215 aa19.19■□□□□ 0.66
CLN3-217ENST00000565354 SEPT8Q92599 483 aa19.19■□□□□ 0.66
CLN3-217ENST00000565354 CALML4Q96GE6 196 aa19.19■□□□□ 0.66
CLN3-217ENST00000565354 SCLT1Q96NL6 688 aa19.19■□□□□ 0.66
CLN3-217ENST00000565354 NT5C3AQ9H0P0 336 aa19.19■□□□□ 0.66
CLN3-217ENST00000565354 BMP2KQ9NSY1 1161 aaPredicted RBP19.19■□□□□ 0.66
CLN3-217ENST00000565354 DDX19AQ9NUU7 478 aaKnown RBP19.19■□□□□ 0.66
CLN3-217ENST00000565354 TECTAO75443 2155 aa19.18■□□□□ 0.66
CLN3-217ENST00000565354 ARHGEF35A5YM69 484 aa19.18■□□□□ 0.66
CLN3-217ENST00000565354 SPTLC2O15270 562 aa19.18■□□□□ 0.66
CLN3-217ENST00000565354 MAFO75444 373 aaPredicted RBP19.18■□□□□ 0.66
CLN3-217ENST00000565354 UPP2O95045 317 aa19.18■□□□□ 0.66
CLN3-217ENST00000565354 TXLNAP40222 546 aa19.18■□□□□ 0.66
CLN3-217ENST00000565354 DNM1Q05193 864 aaKnown RBP19.18■□□□□ 0.66
CLN3-217ENST00000565354 HFE2Q6ZVN8 426 aa19.18■□□□□ 0.66
CLN3-217ENST00000565354 KIAA0319LQ8IZA0 1049 aa19.18■□□□□ 0.66
CLN3-217ENST00000565354 KRI1Q8N9T8 703 aaKnown RBP19.18■□□□□ 0.66
CLN3-217ENST00000565354 PPP1R16BQ96T49 567 aa19.18■□□□□ 0.66
CLN3-217ENST00000565354 MTRQ99707 1265 aa19.18■□□□□ 0.66
CLN3-217ENST00000565354 CLDND1Q9NY35 253 aa19.18■□□□□ 0.66
CLN3-217ENST00000565354 DNM3Q9UQ16 869 aa19.18■□□□□ 0.66
CLN3-217ENST00000565354 SRPRBQ9Y5M8 271 aaKnown RBP19.18■□□□□ 0.66
CLN3-217ENST00000565354 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.17■□□□□ 0.66
CLN3-217ENST00000565354 NCK2O43639 380 aa19.17■□□□□ 0.66
CLN3-217ENST00000565354 USO1O60763 962 aaKnown RBP19.17■□□□□ 0.66
CLN3-217ENST00000565354 VTNP04004 478 aa19.17■□□□□ 0.66
CLN3-217ENST00000565354 IRS1P35568 1242 aa19.17■□□□□ 0.66
CLN3-217ENST00000565354 LTBRP36941 435 aa19.17■□□□□ 0.66
CLN3-217ENST00000565354 RARRES1P49788 294 aa19.17■□□□□ 0.66
CLN3-217ENST00000565354 KRT85P78386 507 aa19.17■□□□□ 0.66
CLN3-217ENST00000565354 EMC2Q15006 297 aa19.17■□□□□ 0.66
CLN3-217ENST00000565354 FAM26DQ5JW98 314 aa19.17■□□□□ 0.66
CLN3-217ENST00000565354 ZNF579Q8NAF0 562 aaKnown RBP19.17■□□□□ 0.66
CLN3-217ENST00000565354 LINC00301Q8NCQ3 95 aa19.17■□□□□ 0.66
CLN3-217ENST00000565354 TCP11Q8WWU5 503 aa19.17■□□□□ 0.66
CLN3-217ENST00000565354 CELF4Q9BZC1 486 aaKnown RBP19.17■□□□□ 0.66
CLN3-217ENST00000565354 CSRNP2Q9H175 543 aa19.17■□□□□ 0.66
CLN3-217ENST00000565354 ATP6V0A4Q9HBG4 840 aa19.17■□□□□ 0.66
CLN3-217ENST00000565354 FBXO2Q9UK22 296 aaPredicted RBP19.17■□□□□ 0.66
CLN3-217ENST00000565354 DBR1Q9UK59 544 aaKnown RBP19.17■□□□□ 0.66
CLN3-217ENST00000565354 ZDHHC9Q9Y397 364 aa19.17■□□□□ 0.66
CLN3-217ENST00000565354 ARID2Q68CP9 1835 aa19.16■□□□□ 0.66
CLN3-217ENST00000565354 SLC26A4O43511 780 aa19.16■□□□□ 0.66
CLN3-217ENST00000565354 GAS2O43903 313 aaKnown RBP19.16■□□□□ 0.66
CLN3-217ENST00000565354 PPP6R2O75170 966 aa19.16■□□□□ 0.66
CLN3-217ENST00000565354 DGAT1O75907 488 aa19.16■□□□□ 0.66
CLN3-217ENST00000565354 GHRP10912 638 aa19.16■□□□□ 0.66
CLN3-217ENST00000565354 GRIN1Q05586 938 aa19.16■□□□□ 0.66
CLN3-217ENST00000565354 MGAT3Q09327 533 aa19.16■□□□□ 0.66
CLN3-217ENST00000565354 SMAD2Q15796 467 aaKnown RBP19.16■□□□□ 0.66
CLN3-217ENST00000565354 ECM1Q16610 540 aa19.16■□□□□ 0.66
CLN3-217ENST00000565354 KCNG4Q8TDN1 519 aa19.16■□□□□ 0.66
CLN3-217ENST00000565354 CLIC6Q96NY7 704 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms