RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 TECP42680 631 aa20.52■□□□□ 0.88
CLN3-214ENST00000565140 TOB1P50616 345 aaPredicted RBP20.52■□□□□ 0.88
CLN3-214ENST00000565140 KCNQ1P51787 676 aa20.52■□□□□ 0.88
CLN3-214ENST00000565140 LAMTOR4Q0VGL1 99 aa20.52■□□□□ 0.88
CLN3-214ENST00000565140 ECHDC2Q86YB7 292 aa20.52■□□□□ 0.88
CLN3-214ENST00000565140 EXOC8Q8IYI6 725 aa20.52■□□□□ 0.88
CLN3-214ENST00000565140 C4orf32Q8N8J7 132 aa20.52■□□□□ 0.88
CLN3-214ENST00000565140 IL27Q8NEV9 243 aa20.52■□□□□ 0.88
CLN3-214ENST00000565140 NEK9Q8TD19 979 aa20.52■□□□□ 0.88
CLN3-214ENST00000565140 PIGOQ8TEQ8 1089 aa20.52■□□□□ 0.88
CLN3-214ENST00000565140 PLVAPQ9BX97 442 aa20.52■□□□□ 0.88
CLN3-214ENST00000565140 XPNPEP1Q9NQW7 623 aa20.52■□□□□ 0.88
CLN3-214ENST00000565140 PLAGL2Q9UPG8 496 aa20.52■□□□□ 0.88
CLN3-214ENST00000565140 OR52Z1P0C646 297 aa20.51■□□□□ 0.87
CLN3-214ENST00000565140 BMP1P13497 986 aa20.51■□□□□ 0.87
CLN3-214ENST00000565140 DNAJB1P25685 340 aa20.51■□□□□ 0.87
CLN3-214ENST00000565140 ORC2Q13416 577 aaPredicted RBP20.51■□□□□ 0.87
CLN3-214ENST00000565140 CAMK1Q14012 370 aa20.51■□□□□ 0.87
CLN3-214ENST00000565140 CATSPER3Q86XQ3 398 aa20.51■□□□□ 0.87
CLN3-214ENST00000565140 KLHL23Q8NBE8 558 aa20.51■□□□□ 0.87
CLN3-214ENST00000565140 PSPC1Q8WXF1 523 aaKnown RBP20.51■□□□□ 0.87
CLN3-214ENST00000565140 SYMPKQ92797 1274 aaKnown RBP20.51■□□□□ 0.87
CLN3-214ENST00000565140 MINDY3Q9H8M7 445 aa20.51■□□□□ 0.87
CLN3-214ENST00000565140 ANKEF1Q9NU02 776 aa20.51■□□□□ 0.87
CLN3-214ENST00000565140 TYW1Q9NV66 732 aaKnown RBP20.51■□□□□ 0.87
CLN3-214ENST00000565140 A0A0U1RQF3 1178 aa20.5■□□□□ 0.87
CLN3-214ENST00000565140 MED24O75448 989 aa20.5■□□□□ 0.87
CLN3-214ENST00000565140 ITGB1P05556 798 aa20.5■□□□□ 0.87
CLN3-214ENST00000565140 ATF7P17544 494 aaPredicted RBP20.5■□□□□ 0.87
CLN3-214ENST00000565140 SFPQP23246 707 aaKnown RBP eCLIP20.5■□□□□ 0.87
CLN3-214ENST00000565140 TRAPPC10P48553 1259 aa20.5■□□□□ 0.87
CLN3-214ENST00000565140 TCEAL5Q5H9L2 206 aa20.5■□□□□ 0.87
CLN3-214ENST00000565140 LRRC55Q6ZSA7 311 aa20.5■□□□□ 0.87
CLN3-214ENST00000565140 ZNF598Q86UK7 904 aaKnown RBP20.5■□□□□ 0.87
CLN3-214ENST00000565140 FERMT3Q86UX7 667 aa20.5■□□□□ 0.87
CLN3-214ENST00000565140 RNF169Q8NCN4 708 aa20.5■□□□□ 0.87
CLN3-214ENST00000565140 SPPL3Q8TCT6 385 aa20.5■□□□□ 0.87
CLN3-214ENST00000565140 TCP11Q8WWU5 503 aa20.5■□□□□ 0.87
CLN3-214ENST00000565140 P2RX5Q93086 422 aa20.5■□□□□ 0.87
CLN3-214ENST00000565140 CASD1Q96PB1 797 aa20.5■□□□□ 0.87
CLN3-214ENST00000565140 MTRQ99707 1265 aa20.5■□□□□ 0.87
CLN3-214ENST00000565140 INO80BQ9C086 356 aaPredicted RBP20.5■□□□□ 0.87
CLN3-214ENST00000565140 CWH43Q9H720 699 aa20.5■□□□□ 0.87
CLN3-214ENST00000565140 CHST12Q9NRB3 414 aa20.5■□□□□ 0.87
CLN3-214ENST00000565140 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.49■□□□□ 0.87
CLN3-214ENST00000565140 GAS2O43903 313 aaKnown RBP20.49■□□□□ 0.87
CLN3-214ENST00000565140 CSPG5O95196 566 aa20.49■□□□□ 0.87
CLN3-214ENST00000565140 GJB2P29033 226 aa20.49■□□□□ 0.87
CLN3-214ENST00000565140 MCM2P49736 904 aa20.49■□□□□ 0.87
CLN3-214ENST00000565140 RARRES1P49788 294 aa20.49■□□□□ 0.87
CLN3-214ENST00000565140 TIGD5Q53EQ6 642 aa20.49■□□□□ 0.87
CLN3-214ENST00000565140 NAALADL2Q58DX5 795 aa20.49■□□□□ 0.87
CLN3-214ENST00000565140 CLLU1OSQ5K130 101 aa20.49■□□□□ 0.87
CLN3-214ENST00000565140 CATSPER4Q7RTX7 472 aa20.49■□□□□ 0.87
CLN3-214ENST00000565140 LMAN2LQ9H0V9 348 aa20.49■□□□□ 0.87
CLN3-214ENST00000565140 TUFT1Q9NNX1 390 aa20.49■□□□□ 0.87
CLN3-214ENST00000565140 DACT1Q9NYF0 836 aa20.49■□□□□ 0.87
CLN3-214ENST00000565140 NOL7Q9UMY1 257 aaKnown RBP20.49■□□□□ 0.87
CLN3-214ENST00000565140 PCDHB6Q9Y5E3 794 aa20.49■□□□□ 0.87
CLN3-214ENST00000565140 ASAP2O43150 1006 aa20.48■□□□□ 0.87
CLN3-214ENST00000565140 EOMESO95936 686 aa20.48■□□□□ 0.87
CLN3-214ENST00000565140 XRCC6P12956 609 aaKnown RBP eCLIP20.48■□□□□ 0.87
CLN3-214ENST00000565140 AAK1Q2M2I8 961 aa20.48■□□□□ 0.87
CLN3-214ENST00000565140 SPOUT1Q5T280 376 aaKnown RBP20.48■□□□□ 0.87
CLN3-214ENST00000565140 RNF149Q8NC42 400 aa20.48■□□□□ 0.87
CLN3-214ENST00000565140 ADAMTS19Q8TE59 1207 aa20.48■□□□□ 0.87
CLN3-214ENST00000565140 POLR3CQ9BUI4 534 aaPredicted RBP20.48■□□□□ 0.87
CLN3-214ENST00000565140 TMEM117Q9H0C3 514 aa20.48■□□□□ 0.87
CLN3-214ENST00000565140 NSUN3Q9H649 340 aaKnown RBP20.48■□□□□ 0.87
CLN3-214ENST00000565140 UBE2ZQ9H832 354 aaPredicted RBP20.48■□□□□ 0.87
CLN3-214ENST00000565140 PIN4Q9Y237 131 aaKnown RBP20.48■□□□□ 0.87
CLN3-214ENST00000565140 DGAT1O75907 488 aa20.47■□□□□ 0.87
CLN3-214ENST00000565140 PHKA2P46019 1235 aa20.47■□□□□ 0.87
CLN3-214ENST00000565140 PTGDRQ13258 359 aa20.47■□□□□ 0.87
CLN3-214ENST00000565140 MCTP1Q6DN14 999 aa20.47■□□□□ 0.87
CLN3-214ENST00000565140 TWF2Q6IBS0 349 aaKnown RBP20.47■□□□□ 0.87
CLN3-214ENST00000565140 SRGAP1Q7Z6B7 1085 aa20.47■□□□□ 0.87
CLN3-214ENST00000565140 COLGALT1Q8NBJ5 622 aa20.47■□□□□ 0.87
CLN3-214ENST00000565140 TRAIPQ9BWF2 469 aa20.47■□□□□ 0.87
CLN3-214ENST00000565140 BACH2Q9BYV9 841 aa20.47■□□□□ 0.87
CLN3-214ENST00000565140 KIF3AQ9Y496 699 aa20.47■□□□□ 0.87
CLN3-214ENST00000565140 HOXA2O43364 376 aa20.46■□□□□ 0.87
CLN3-214ENST00000565140 RPA1P27694 616 aa20.46■□□□□ 0.87
CLN3-214ENST00000565140 HOXA11P31270 313 aaPredicted RBP20.46■□□□□ 0.87
CLN3-214ENST00000565140 ARL2P36404 184 aa20.46■□□□□ 0.87
CLN3-214ENST00000565140 FXR2P51116 673 aaKnown RBP eCLIP20.46■□□□□ 0.87
CLN3-214ENST00000565140 ECM1Q16610 540 aa20.46■□□□□ 0.87
CLN3-214ENST00000565140 LONRF3Q496Y0 759 aa20.46■□□□□ 0.87
CLN3-214ENST00000565140 POTEGQ6S5H5 508 aa20.46■□□□□ 0.87
CLN3-214ENST00000565140 HELQQ8TDG4 1101 aa20.46■□□□□ 0.87
CLN3-214ENST00000565140 ASAP3Q8TDY4 903 aa20.46■□□□□ 0.87
CLN3-214ENST00000565140 POF1BQ8WVV4 589 aa20.46■□□□□ 0.87
CLN3-214ENST00000565140 LPPQ93052 612 aa20.46■□□□□ 0.87
CLN3-214ENST00000565140 AGPAT5Q9NUQ2 364 aa20.46■□□□□ 0.87
CLN3-214ENST00000565140 PCDHB12Q9Y5F1 795 aa20.46■□□□□ 0.87
CLN3-214ENST00000565140 MEIS3P2A8K0S8 358 aa20.45■□□□□ 0.86
CLN3-214ENST00000565140 KCNA5P22460 613 aa20.45■□□□□ 0.86
CLN3-214ENST00000565140 IRS1P35568 1242 aa20.45■□□□□ 0.86
CLN3-214ENST00000565140 MXD4Q14582 209 aaPredicted RBP20.45■□□□□ 0.86
CLN3-214ENST00000565140 COL19A1Q14993 1142 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms