RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 CXXC1Q9P0U4 656 aaPredicted RBP10.87□□□□□ -0.67
CLK3-208ENST00000562626 SERTAD1Q9UHV2 236 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 PPME1Q9Y570 386 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 LAMA2P24043 3122 aaKnown RBP10.87□□□□□ -0.67
CLK3-208ENST00000562626 PLXNA4Q9HCM2 1894 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 COL4A4P53420 1690 aaPredicted RBP10.86□□□□□ -0.67
CLK3-208ENST00000562626 A0A1W2PQ27 194 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 A0A1W2PQ64 194 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 A0A1W2PQD8 194 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 TTLL13PA6NNM8 815 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 MGEA5O60502 916 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 SRGAP2CP0DJJ0 459 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 LIG1P18858 919 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 STAT6P42226 847 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 GIT2Q14161 759 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 SHHQ15465 462 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 PLEKHG4Q58EX7 1191 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 CHRDL2Q6WN34 429 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 TMCO2Q7Z6W1 182 aaPredicted RBP10.86□□□□□ -0.67
CLK3-208ENST00000562626 RTN4RL1Q86UN2 441 aaPredicted RBP10.86□□□□□ -0.67
CLK3-208ENST00000562626 NME8Q8N427 588 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 TMEM199Q8N511 208 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 TMEM87AQ8NBN3 555 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 DNAJC19Q96DA6 116 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 LBHD1Q9BQE6 289 aaPredicted RBP10.86□□□□□ -0.67
CLK3-208ENST00000562626 ERVK-5Q9HDB9 667 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 STK17AQ9UEE5 414 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 CCDC39Q9UFE4 941 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 KCNH3Q9ULD8 1083 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 USP20Q9Y2K6 914 aa10.86□□□□□ -0.67
CLK3-208ENST00000562626 MYO9BQ13459 2157 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.85□□□□□ -0.67
CLK3-208ENST00000562626 PRR29P0C7W0 189 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 DARSP14868 501 aaKnown RBP10.85□□□□□ -0.67
CLK3-208ENST00000562626 GUCY2CP25092 1073 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 TMOD1P28289 359 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 TXLNAP40222 546 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 CRYBB1P53674 252 aaPredicted RBP10.85□□□□□ -0.67
CLK3-208ENST00000562626 PPIGQ13427 754 aaKnown RBP eCLIP10.85□□□□□ -0.671e-6■■□□□ 11.4
CLK3-208ENST00000562626 LONRF3Q496Y0 759 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 FAM109BQ6ICB4 259 aaPredicted RBP10.85□□□□□ -0.67
CLK3-208ENST00000562626 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.85□□□□□ -0.67
CLK3-208ENST00000562626 CCDC73Q6ZRK6 1079 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 CLEC17AQ6ZS10 378 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 OTOP2Q7RTS6 562 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 DYMQ7RTS9 669 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 TAS1R3Q7RTX0 852 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 RSPH3Q86UC2 560 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 RNF149Q8NC42 400 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 MCPH1Q8NEM0 835 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 ENGASEQ8NFI3 743 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 TCP11Q8WWU5 503 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 NLRP7Q8WX94 980 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 PSPC1Q8WXF1 523 aaKnown RBP10.85□□□□□ -0.67
CLK3-208ENST00000562626 MRPS27Q92552 414 aaKnown RBP10.85□□□□□ -0.67
CLK3-208ENST00000562626 JPH2Q9BR39 696 aaPredicted RBP10.85□□□□□ -0.67
CLK3-208ENST00000562626 FGFBP2Q9BYJ0 223 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 KBTBD4Q9NVX7 518 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 PADI3Q9ULW8 664 aa10.85□□□□□ -0.67
CLK3-208ENST00000562626 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.84□□□□□ -0.67
CLK3-208ENST00000562626 GAS2O43903 313 aaKnown RBP10.84□□□□□ -0.67
CLK3-208ENST00000562626 EIF4BP23588 611 aaKnown RBP10.84□□□□□ -0.67
CLK3-208ENST00000562626 RFC2P35250 354 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 AFMP43652 599 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 DNM2P50570 870 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 PEX3P56589 373 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 PTENP60484 403 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 DEFB103AP81534 67 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 MBTD1Q05BQ5 628 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 SNW1Q13573 536 aaKnown RBP10.84□□□□□ -0.67
CLK3-208ENST00000562626 AMHR2Q16671 573 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 RASIP1Q5U651 963 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 CDCA2Q69YH5 1023 aaPredicted RBP10.84□□□□□ -0.67
CLK3-208ENST00000562626 TSHZ1Q6ZSZ6 1077 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 KCTD17Q8N5Z5 321 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 HPS3Q969F9 1004 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 FIZ1Q96SL8 496 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 IFIH1Q9BYX4 1025 aaKnown RBP10.84□□□□□ -0.67
CLK3-208ENST00000562626 UBE2OQ9C0C9 1292 aaKnown RBP10.84□□□□□ -0.67
CLK3-208ENST00000562626 CCDC113Q9H0I3 377 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 BLZF1Q9H2G9 400 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 FAM13BQ9NYF5 915 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 ST3GAL5Q9UNP4 418 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 COL6A3P12111 3177 aa10.84□□□□□ -0.67
CLK3-208ENST00000562626 LRRIQ4A6NIV6 560 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 GRXCR1A8MXD5 290 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 M0QZ92 97 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 B4GALT5O43286 388 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 PRPF40AO75400 957 aaKnown RBP10.83□□□□□ -0.68
CLK3-208ENST00000562626 NR1I2O75469 434 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 RPS6KA5O75582 802 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 ZNF202O95125 648 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 BMP8BP34820 402 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 SYKP43405 635 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 NPTX2P47972 431 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 ZNF131P52739 623 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 NFX1Q12986 1120 aaKnown RBP10.83□□□□□ -0.68
CLK3-208ENST00000562626 CUL4BQ13620 913 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 DSC3Q14574 896 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 CNKSR3Q6P9H4 555 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms