RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 SFPQP23246 707 aaKnown RBP eCLIP17.47■□□□□ 0.39
VPS39-203ENST00000561797 TRAPPC10P48553 1259 aa17.47■□□□□ 0.39
VPS39-203ENST00000561797 LAMTOR4Q0VGL1 99 aa17.47■□□□□ 0.39
VPS39-203ENST00000561797 ORC2Q13416 577 aaPredicted RBP17.47■□□□□ 0.39
VPS39-203ENST00000561797 CATSPER4Q7RTX7 472 aa17.47■□□□□ 0.39
VPS39-203ENST00000561797 ECHDC2Q86YB7 292 aa17.47■□□□□ 0.39
VPS39-203ENST00000561797 HLA-CQ95604 372 aa17.47■□□□□ 0.39
VPS39-203ENST00000561797 ELAC1Q9H777 363 aaKnown RBP17.47■□□□□ 0.39
VPS39-203ENST00000561797 ALG13Q9NP73 1137 aaKnown RBP17.47■□□□□ 0.39
VPS39-203ENST00000561797 ANKEF1Q9NU02 776 aa17.47■□□□□ 0.39
VPS39-203ENST00000561797 UNC80Q8N2C7 3258 aa17.46■□□□□ 0.39
VPS39-203ENST00000561797 GAS2O43903 313 aaKnown RBP17.46■□□□□ 0.39
VPS39-203ENST00000561797 MED24O75448 989 aa17.46■□□□□ 0.39
VPS39-203ENST00000561797 SPATA31C1P0DKV0 1188 aa17.46■□□□□ 0.39
VPS39-203ENST00000561797 TOB1P50616 345 aaPredicted RBP17.46■□□□□ 0.39
VPS39-203ENST00000561797 CATSPER3Q86XQ3 398 aa17.46■□□□□ 0.39
VPS39-203ENST00000561797 SYMPKQ92797 1274 aaKnown RBP17.46■□□□□ 0.39
VPS39-203ENST00000561797 PLVAPQ9BX97 442 aa17.46■□□□□ 0.39
VPS39-203ENST00000561797 IFT122Q9HBG6 1241 aa17.46■□□□□ 0.39
VPS39-203ENST00000561797 XPNPEP1Q9NQW7 623 aa17.46■□□□□ 0.39
VPS39-203ENST00000561797 DACT1Q9NYF0 836 aa17.46■□□□□ 0.39
VPS39-203ENST00000561797 HCSTQ9UBK5 93 aa17.46■□□□□ 0.39
VPS39-203ENST00000561797 COG5Q9UP83 839 aa17.46■□□□□ 0.39
VPS39-203ENST00000561797 SMC3Q9UQE7 1217 aa17.46■□□□□ 0.39
VPS39-203ENST00000561797 PCDHB6Q9Y5E3 794 aa17.46■□□□□ 0.39
VPS39-203ENST00000561797 H3BQV1 296 aa17.45■□□□□ 0.38
VPS39-203ENST00000561797 ASAP2O43150 1006 aa17.45■□□□□ 0.38
VPS39-203ENST00000561797 KCNQ1P51787 676 aa17.45■□□□□ 0.38
VPS39-203ENST00000561797 AAK1Q2M2I8 961 aa17.45■□□□□ 0.38
VPS39-203ENST00000561797 TIGD5Q53EQ6 642 aa17.45■□□□□ 0.38
VPS39-203ENST00000561797 TWF2Q6IBS0 349 aaKnown RBP17.45■□□□□ 0.38
VPS39-203ENST00000561797 FERMT3Q86UX7 667 aa17.45■□□□□ 0.38
VPS39-203ENST00000561797 C4orf32Q8N8J7 132 aa17.45■□□□□ 0.38
VPS39-203ENST00000561797 KLHL23Q8NBE8 558 aa17.45■□□□□ 0.38
VPS39-203ENST00000561797 RNF149Q8NC42 400 aa17.45■□□□□ 0.38
VPS39-203ENST00000561797 ERMNQ8TAM6 284 aa17.45■□□□□ 0.38
VPS39-203ENST00000561797 BACH2Q9BYV9 841 aa17.45■□□□□ 0.38
VPS39-203ENST00000561797 TUFT1Q9NNX1 390 aa17.45■□□□□ 0.38
VPS39-203ENST00000561797 CHST12Q9NRB3 414 aa17.45■□□□□ 0.38
VPS39-203ENST00000561797 RNF19AQ9NV58 838 aa17.45■□□□□ 0.38
VPS39-203ENST00000561797 TYW1Q9NV66 732 aaKnown RBP17.45■□□□□ 0.38
VPS39-203ENST00000561797 PLAGL2Q9UPG8 496 aa17.45■□□□□ 0.38
VPS39-203ENST00000561797 PIN4Q9Y237 131 aaKnown RBP17.45■□□□□ 0.38
VPS39-203ENST00000561797 A0A0U1RQF3 1178 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 HOXA2O43364 376 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 DGAT1O75907 488 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 ITGB1P05556 798 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 RARRES1P49788 294 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 PTGDRQ13258 359 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 LONRF3Q496Y0 759 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 TCEAL5Q5H9L2 206 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 MAEAQ7L5Y9 396 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 SRGAP1Q7Z6B7 1085 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 ABI1Q8IZP0 508 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 P2RX5Q93086 422 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 CASD1Q96PB1 797 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 POLR3CQ9BUI4 534 aaPredicted RBP17.44■□□□□ 0.38
VPS39-203ENST00000561797 TMEM117Q9H0C3 514 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 LMAN2LQ9H0V9 348 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 NSUN3Q9H649 340 aaKnown RBP17.44■□□□□ 0.38
VPS39-203ENST00000561797 MINDY3Q9H8M7 445 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 PCDHB12Q9Y5F1 795 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 TDRD15B5MCY1 1934 aaKnown RBP17.44■□□□□ 0.38
VPS39-203ENST00000561797 BRWD1Q9NSI6 2320 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 MYH11P35749 1972 aa17.44■□□□□ 0.38
VPS39-203ENST00000561797 USO1O60763 962 aaKnown RBP17.43■□□□□ 0.38
VPS39-203ENST00000561797 EOMESO95936 686 aa17.43■□□□□ 0.38
VPS39-203ENST00000561797 XRCC6P12956 609 aaKnown RBP eCLIP17.43■□□□□ 0.38
VPS39-203ENST00000561797 NAALADL2Q58DX5 795 aa17.43■□□□□ 0.38
VPS39-203ENST00000561797 CLLU1OSQ5K130 101 aa17.43■□□□□ 0.38
VPS39-203ENST00000561797 POTEGQ6S5H5 508 aa17.43■□□□□ 0.38
VPS39-203ENST00000561797 EP400NLQ6ZTU2 488 aa17.43■□□□□ 0.38
VPS39-203ENST00000561797 ZNF598Q86UK7 904 aaKnown RBP17.43■□□□□ 0.38
VPS39-203ENST00000561797 SPPL3Q8TCT6 385 aa17.43■□□□□ 0.38
VPS39-203ENST00000561797 HELQQ8TDG4 1101 aa17.43■□□□□ 0.38
VPS39-203ENST00000561797 NACC1Q96RE7 527 aa17.43■□□□□ 0.38
VPS39-203ENST00000561797 CWH43Q9H720 699 aa17.43■□□□□ 0.38
VPS39-203ENST00000561797 AAASQ9NRG9 546 aa17.43■□□□□ 0.38
VPS39-203ENST00000561797 LRWD1Q9UFC0 647 aa17.43■□□□□ 0.38
VPS39-203ENST00000561797 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.43■□□□□ 0.38
VPS39-203ENST00000561797 ATF7P17544 494 aaPredicted RBP17.42■□□□□ 0.38
VPS39-203ENST00000561797 DNAJB1P25685 340 aa17.42■□□□□ 0.38
VPS39-203ENST00000561797 RPA1P27694 616 aa17.42■□□□□ 0.38
VPS39-203ENST00000561797 CCT6AP40227 531 aaKnown RBP17.42■□□□□ 0.38
VPS39-203ENST00000561797 PHKA2P46019 1235 aa17.42■□□□□ 0.38
VPS39-203ENST00000561797 FXR2P51116 673 aaKnown RBP eCLIP17.42■□□□□ 0.38
VPS39-203ENST00000561797 MXD4Q14582 209 aaPredicted RBP17.42■□□□□ 0.38
VPS39-203ENST00000561797 LARP1BQ659C4 914 aaKnown RBP17.42■□□□□ 0.38
VPS39-203ENST00000561797 LRRC55Q6ZSA7 311 aa17.42■□□□□ 0.38
VPS39-203ENST00000561797 THNSL1Q8IYQ7 743 aa17.42■□□□□ 0.38
VPS39-203ENST00000561797 COLGALT1Q8NBJ5 622 aa17.42■□□□□ 0.38
VPS39-203ENST00000561797 ASAP3Q8TDY4 903 aa17.42■□□□□ 0.38
VPS39-203ENST00000561797 ADAMTS19Q8TE59 1207 aa17.42■□□□□ 0.38
VPS39-203ENST00000561797 LPPQ93052 612 aa17.42■□□□□ 0.38
VPS39-203ENST00000561797 POLR3FQ9H1D9 316 aaPredicted RBP17.42■□□□□ 0.38
VPS39-203ENST00000561797 UBE2ZQ9H832 354 aaPredicted RBP17.42■□□□□ 0.38
VPS39-203ENST00000561797 AGPAT5Q9NUQ2 364 aa17.42■□□□□ 0.38
VPS39-203ENST00000561797 FAM105AQ9NUU6 356 aa17.42■□□□□ 0.38
VPS39-203ENST00000561797 BMP1P13497 986 aa17.41■□□□□ 0.38
VPS39-203ENST00000561797 ARL2P36404 184 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms