RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 PER2O15055 1255 aa18.19■□□□□ 0.5
SNX1-213ENST00000561026 TBX3O15119 743 aa18.19■□□□□ 0.5
SNX1-213ENST00000561026 CCNT1O60563 726 aaKnown RBP18.19■□□□□ 0.5
SNX1-213ENST00000561026 GLP2RO95838 553 aa18.19■□□□□ 0.5
SNX1-213ENST00000561026 CLLU1OSQ5K130 101 aa18.19■□□□□ 0.5
SNX1-213ENST00000561026 KCNT2Q6UVM3 1135 aa18.19■□□□□ 0.5
SNX1-213ENST00000561026 ZNF410Q86VK4 478 aa18.19■□□□□ 0.5
SNX1-213ENST00000561026 SMRP1Q8NCR6 262 aa18.19■□□□□ 0.5
SNX1-213ENST00000561026 MRPS27Q92552 414 aaKnown RBP18.19■□□□□ 0.5
SNX1-213ENST00000561026 WASF1Q92558 559 aa18.19■□□□□ 0.5
SNX1-213ENST00000561026 HAS1Q92839 578 aa18.19■□□□□ 0.5
SNX1-213ENST00000561026 POP1Q99575 1024 aaKnown RBP18.19■□□□□ 0.5
SNX1-213ENST00000561026 NAP1L4Q99733 375 aaKnown RBP18.19■□□□□ 0.5
SNX1-213ENST00000561026 JPH2Q9BR39 696 aaPredicted RBP18.19■□□□□ 0.5
SNX1-213ENST00000561026 FDXACB1Q9BRP7 624 aaPredicted RBP18.19■□□□□ 0.5
SNX1-213ENST00000561026 CYP26B1Q9NR63 512 aa18.19■□□□□ 0.5
SNX1-213ENST00000561026 PUF60Q9UHX1 559 aaKnown RBP18.19■□□□□ 0.5
SNX1-213ENST00000561026 PLXNA4Q9HCM2 1894 aa18.19■□□□□ 0.5
SNX1-213ENST00000561026 FSCN2O14926 492 aa18.18■□□□□ 0.5
SNX1-213ENST00000561026 DCXO43602 365 aa18.18■□□□□ 0.5
SNX1-213ENST00000561026 P4HBP07237 508 aaKnown RBP18.18■□□□□ 0.5
SNX1-213ENST00000561026 FDPSP14324 419 aaKnown RBP18.18■□□□□ 0.5
SNX1-213ENST00000561026 ATF7P17544 494 aaPredicted RBP18.18■□□□□ 0.5
SNX1-213ENST00000561026 EARS2Q5JPH6 523 aaKnown RBP18.18■□□□□ 0.5
SNX1-213ENST00000561026 PLA2G4FQ68DD2 849 aa18.18■□□□□ 0.5
SNX1-213ENST00000561026 RHPN2Q8IUC4 686 aa18.18■□□□□ 0.5
SNX1-213ENST00000561026 ZNF558Q96NG5 402 aa18.18■□□□□ 0.5
SNX1-213ENST00000561026 CDCA3Q99618 268 aaPredicted RBP18.18■□□□□ 0.5
SNX1-213ENST00000561026 TRAIPQ9BWF2 469 aa18.18■□□□□ 0.5
SNX1-213ENST00000561026 INO80BQ9C086 356 aaPredicted RBP18.18■□□□□ 0.5
SNX1-213ENST00000561026 BARX2Q9UMQ3 279 aaPredicted RBP18.18■□□□□ 0.5
SNX1-213ENST00000561026 DKC1O60832 514 aaKnown RBP eCLIP18.17■□□□□ 0.5
SNX1-213ENST00000561026 SFPQP23246 707 aaKnown RBP eCLIP18.17■□□□□ 0.5
SNX1-213ENST00000561026 PPM1AP35813 382 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 NPEPPSP55786 919 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 DUSP6Q16828 381 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 ERICH6BQ5W0A0 696 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 KSR1Q8IVT5 923 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 NECAB1Q8N987 351 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 WRAP73Q9P2S5 460 aaPredicted RBP18.17■□□□□ 0.5
SNX1-213ENST00000561026 HCN4Q9Y3Q4 1203 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 ARIH1Q9Y4X5 557 aaPredicted RBP18.17■□□□□ 0.5
SNX1-213ENST00000561026 FSD2A1L4K1 749 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 PRR33A8MZF0 331 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 MARCH6O60337 910 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 PBX3P40426 434 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 PHKA2P46019 1235 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 KRT17Q04695 432 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 EPHA7Q15375 998 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 ME3Q16798 604 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 EXOC8Q8IYI6 725 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 ZNF579Q8NAF0 562 aaKnown RBP18.17■□□□□ 0.5
SNX1-213ENST00000561026 HELQQ8TDG4 1101 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 SLC7A3Q8WY07 619 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 CEP170P1Q96L14 293 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 NLRP4Q96MN2 994 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 TCF25Q9BQ70 676 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 SPG21Q9NZD8 308 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 PPME1Q9Y570 386 aa18.17■□□□□ 0.5
SNX1-213ENST00000561026 KRT2P35908 639 aa18.16■□□□□ 0.5
SNX1-213ENST00000561026 RBM10P98175 930 aaKnown RBP18.16■□□□□ 0.5
SNX1-213ENST00000561026 NR5A1Q13285 461 aa18.16■□□□□ 0.5
SNX1-213ENST00000561026 PLPP4Q5VZY2 271 aa18.16■□□□□ 0.5
SNX1-213ENST00000561026 TWF2Q6IBS0 349 aaKnown RBP18.16■□□□□ 0.5
SNX1-213ENST00000561026 POTEDQ86YR6 584 aa18.16■□□□□ 0.5
SNX1-213ENST00000561026 C4orf19Q8IY42 314 aa18.16■□□□□ 0.5
SNX1-213ENST00000561026 SLFN12Q8IYM2 578 aa18.16■□□□□ 0.5
SNX1-213ENST00000561026 VN1R2Q8NFZ6 395 aa18.16■□□□□ 0.5
SNX1-213ENST00000561026 TNFRSF25Q93038 417 aa18.16■□□□□ 0.5
SNX1-213ENST00000561026 GTF3C6Q969F1 213 aa18.16■□□□□ 0.5
SNX1-213ENST00000561026 MRPL9Q9BYD2 267 aaKnown RBP18.16■□□□□ 0.5
SNX1-213ENST00000561026 DHX33Q9H6R0 707 aaKnown RBP18.16■□□□□ 0.5
SNX1-213ENST00000561026 IFT122Q9HBG6 1241 aa18.16■□□□□ 0.5
SNX1-213ENST00000561026 NGRNQ9NPE2 291 aaKnown RBP18.16■□□□□ 0.5
SNX1-213ENST00000561026 PIN4Q9Y237 131 aaKnown RBP18.16■□□□□ 0.5
SNX1-213ENST00000561026 TRIOO75962 3097 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 FAM205CA6NFA0 338 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 BAG4O95429 457 aaKnown RBP18.15■□□□□ 0.5
SNX1-213ENST00000561026 LARGE1O95461 756 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 SKIP12755 728 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 PLA2G5P39877 138 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 SPIRE1Q08AE8 756 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 KCNC3Q14003 757 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 TMEM184AQ6ZMB5 413 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 CATSPER4Q7RTX7 472 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 SLC39A11Q8N1S5 342 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 PRPF31Q8WWY3 499 aaKnown RBP18.15■□□□□ 0.5
SNX1-213ENST00000561026 RSPH1Q8WYR4 309 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 LXNQ9BS40 222 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 BRMS1Q9HCU9 246 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 ENTPD7Q9NQZ7 604 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 RGL1Q9NZL6 768 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 USP15Q9Y4E8 981 aaPredicted RBP18.15■□□□□ 0.5
SNX1-213ENST00000561026 COL4A3BPQ9Y5P4 624 aa18.15■□□□□ 0.5
SNX1-213ENST00000561026 HIDE1A8MVS5 230 aa18.14■□□□□ 0.49
SNX1-213ENST00000561026 ZNF623O75123 536 aa18.14■□□□□ 0.49
SNX1-213ENST00000561026 YWHABP31946 246 aaKnown RBP18.14■□□□□ 0.49
SNX1-213ENST00000561026 RFC5P40937 340 aa18.14■□□□□ 0.49
SNX1-213ENST00000561026 ALDH7A1P49419 539 aaKnown RBP18.14■□□□□ 0.49
SNX1-213ENST00000561026 POLGP54098 1239 aaPredicted RBP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms