RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	EFHB	Q8N7U6	833 aa		15.74	■□□□□ 0.11
TPM1-223	ENST00000560445	NECAB1	Q8N987	351 aa		15.74	■□□□□ 0.11
TPM1-223	ENST00000560445	COLGALT1	Q8NBJ5	622 aa		15.74	■□□□□ 0.11
TPM1-223	ENST00000560445	RNF169	Q8NCN4	708 aa		15.74	■□□□□ 0.11
TPM1-223	ENST00000560445	GJA10	Q969M2	543 aa		15.74	■□□□□ 0.11
TPM1-223	ENST00000560445	PGBD4	Q96DM1	585 aa		15.74	■□□□□ 0.11
TPM1-223	ENST00000560445	NLRP4	Q96MN2	994 aa		15.74	■□□□□ 0.11
TPM1-223	ENST00000560445	NECAB3	Q96P71	396 aa	Predicted RBP	15.74	■□□□□ 0.11
TPM1-223	ENST00000560445	SH2B1	Q9NRF2	756 aa	Predicted RBP	15.74	■□□□□ 0.11
TPM1-223	ENST00000560445	DAXX	Q9UER7	740 aa	Predicted RBP	15.74	■□□□□ 0.11
TPM1-223	ENST00000560445	COL4A3BP	Q9Y5P4	624 aa		15.74	■□□□□ 0.11
TPM1-223	ENST00000560445	XIRP2	A4UGR9	3374 aa		15.73	■□□□□ 0.11
TPM1-223	ENST00000560445		H3BQ06	376 aa	Predicted RBP	15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	ALAD	P13716	330 aa		15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	PLCB3	Q01970	1234 aa		15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	HYAL1	Q12794	435 aa		15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	SMAD4	Q13485	552 aa	Known RBP	15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	GNL2	Q13823	731 aa	Known RBP	15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	TFDP1	Q14186	410 aa		15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	MXD4	Q14582	209 aa	Predicted RBP	15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	CTC1	Q2NKJ3	1217 aa		15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	SRGAP1	Q7Z6B7	1085 aa		15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	GJD3	Q8N144	294 aa		15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	OXER1	Q8TDS5	423 aa		15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	HAS1	Q92839	578 aa		15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	UPF2	Q9HAU5	1272 aa	Known RBP	15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	NGRN	Q9NPE2	291 aa	Known RBP	15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	TYW1	Q9NV66	732 aa	Known RBP	15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	CD207	Q9UJ71	328 aa		15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	PIN4	Q9Y237	131 aa	Known RBP	15.73	■□□□□ 0.11
TPM1-223	ENST00000560445	MYO7A	Q13402	2215 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445		A0A087WZ62	844 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	EML1	O00423	815 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	STBD1	O95210	358 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	LYPLA2	O95372	231 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	FGFR1	P11362	822 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	FDPS	P14324	419 aa	Known RBP	15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	PHKA2	P46019	1235 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	ALDH7A1	P49419	539 aa	Known RBP	15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	C1QBP	Q07021	282 aa	Known RBP	15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	NR5A1	Q13285	461 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	XKR9	Q5GH70	373 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	FAM102B	Q5T8I3	360 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	PLA2G4F	Q68DD2	849 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	FAM184A	Q8NB25	1140 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	CNNM3	Q8NE01	707 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	MRPS27	Q92552	414 aa	Known RBP	15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	CCDC51	Q96ER9	411 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	C8orf76	Q96K31	380 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	MTR	Q99707	1265 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	FDXACB1	Q9BRP7	624 aa	Predicted RBP	15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	IGFLR1	Q9H665	355 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	DHX33	Q9H6R0	707 aa	Known RBP	15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	TLE6	Q9H808	572 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	ANKEF1	Q9NU02	776 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	SPG21	Q9NZD8	308 aa		15.72	■□□□□ 0.11
TPM1-223	ENST00000560445	DGAT1	O75907	488 aa		15.71	■□□□□ 0.11
TPM1-223	ENST00000560445	ERLIN2	O94905	339 aa		15.71	■□□□□ 0.11
TPM1-223	ENST00000560445	XRCC6	P12956	609 aa	Known RBP eCLIP	15.71	■□□□□ 0.11
TPM1-223	ENST00000560445	GATM	P50440	423 aa		15.71	■□□□□ 0.11
TPM1-223	ENST00000560445	EMC2	Q15006	297 aa		15.71	■□□□□ 0.11
TPM1-223	ENST00000560445	KCNT2	Q6UVM3	1135 aa		15.71	■□□□□ 0.11
TPM1-223	ENST00000560445	ADHFE1	Q8IWW8	467 aa		15.71	■□□□□ 0.11
TPM1-223	ENST00000560445	HACE1	Q8IYU2	909 aa		15.71	■□□□□ 0.11
TPM1-223	ENST00000560445	ERMN	Q8TAM6	284 aa		15.71	■□□□□ 0.11
TPM1-223	ENST00000560445	URGCP	Q8TCY9	931 aa		15.71	■□□□□ 0.11
TPM1-223	ENST00000560445	TNFRSF25	Q93038	417 aa		15.71	■□□□□ 0.11
TPM1-223	ENST00000560445	CEP89	Q96ST8	783 aa		15.71	■□□□□ 0.11
TPM1-223	ENST00000560445	TTC12	Q9H892	705 aa	Predicted RBP	15.71	■□□□□ 0.11
TPM1-223	ENST00000560445	ENTPD7	Q9NQZ7	604 aa		15.71	■□□□□ 0.11
TPM1-223	ENST00000560445	NOL7	Q9UMY1	257 aa	Known RBP	15.71	■□□□□ 0.11
TPM1-223	ENST00000560445	MUC3A	Q02505	3323 aa		15.71	■□□□□ 0.1
TPM1-223	ENST00000560445	CNTNAP2	Q9UHC6	1331 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	BTBD18	B2RXH4	712 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	ZNF623	O75123	536 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	IL9	P15248	144 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	AXL	P30530	894 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	NRIP1	P48552	1158 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	TRAPPC10	P48553	1259 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	RBM25	P49756	843 aa	Known RBP	15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	ADAM15	Q13444	863 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	SMAD2	Q15796	467 aa	Known RBP	15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	TMEM31	Q5JXX7	168 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	ZNF598	Q86UK7	904 aa	Known RBP	15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	TPH2	Q8IWU9	490 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	TMEM87A	Q8NBN3	555 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	PRPF31	Q8WWY3	499 aa	Known RBP	15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	TMEM169	Q96HH4	297 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	CASD1	Q96PB1	797 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	FOXP1	Q9H334	677 aa	Predicted RBP	15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	CWH43	Q9H720	699 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	UBN1	Q9NPG3	1134 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	GJB4	Q9NTQ9	266 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	AGPAT5	Q9NUQ2	364 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	FAM105A	Q9NUU6	356 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	KANSL3	Q9P2N6	904 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	STK24	Q9Y6E0	443 aa		15.7	■□□□□ 0.1
TPM1-223	ENST00000560445	ATG2A	Q2TAZ0	1938 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	TMEM150B	A6NC51	233 aa		15.69	■□□□□ 0.1

Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms