RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 FDX1P10109 184 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 ACTN1P12814 892 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 KRT13P13646 458 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 LMAN1P49257 510 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 CETN1Q12798 172 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 PAK2Q13177 524 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 CLUL1Q15846 466 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 KIAA1755Q5JYT7 1200 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 ODR4Q5SWX8 454 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 ALS2CLQ60I27 953 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 DPY19L2P1Q6NXN4 242 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 ALKBH5Q6P6C2 394 aaKnown RBP7.92□□□□□ -1.14
VPS13C-206ENST00000558338 H2AFVQ71UI9 128 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 MIER3Q7Z3K6 550 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 ZNF571Q7Z3V5 609 aaPredicted RBP7.92□□□□□ -1.14
VPS13C-206ENST00000558338 ANKRD13CQ8N6S4 541 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 EIF1ADQ8N9N8 165 aaKnown RBP7.92□□□□□ -1.14
VPS13C-206ENST00000558338 PROCA1Q8NCQ7 364 aaPredicted RBP7.92□□□□□ -1.14
VPS13C-206ENST00000558338 BORCS6Q96GS4 357 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 IWS1Q96ST2 819 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 RUFY1Q96T51 708 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 STK33Q9BYT3 514 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 CRISPLD2Q9H0B8 497 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 SIX2Q9NPC8 291 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 AGPAT3Q9NRZ7 376 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 DMAC2Q9NW81 257 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 LARSQ9P2J5 1176 aaKnown RBP7.92□□□□□ -1.14
VPS13C-206ENST00000558338 NAGPAQ9UK23 515 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 DBR1Q9UK59 544 aaKnown RBP7.92□□□□□ -1.14
VPS13C-206ENST00000558338 NENFQ9UMX5 172 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 MAPK13O15264 365 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 NCK2O43639 380 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 RNF40O75150 1001 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 RPS6KA5O75582 802 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 KIF4AO95239 1232 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 LYPLA2O95372 231 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 TAL1P17542 331 aaPredicted RBP7.91□□□□□ -1.14
VPS13C-206ENST00000558338 NMT1P30419 496 aaKnown RBP7.91□□□□□ -1.14
VPS13C-206ENST00000558338 SOX5P35711 763 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 FMO5P49326 533 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 CASP4P49662 377 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 MYL7Q01449 175 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 PCNX4Q63HM2 1172 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 INTS8Q75QN2 995 aaKnown RBP7.91□□□□□ -1.14
VPS13C-206ENST00000558338 C12orf56Q8IXR9 622 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 SYCP3Q8IZU3 236 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 PRPF38AQ8NAV1 312 aaKnown RBP7.91□□□□□ -1.14
VPS13C-206ENST00000558338 CCDC43Q96MW1 224 aaKnown RBP7.91□□□□□ -1.14
VPS13C-206ENST00000558338 INPP4AQ96PE3 977 aaPredicted RBP7.91□□□□□ -1.14
VPS13C-206ENST00000558338 FIZ1Q96SL8 496 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 LRRC1Q9BTT6 524 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 ZCCHC17Q9NP64 241 aaKnown RBP7.91□□□□□ -1.14
VPS13C-206ENST00000558338 TBC1D22BQ9NU19 505 aa7.91□□□□□ -1.14
VPS13C-206ENST00000558338 DIS3Q9Y2L1 958 aaKnown RBP7.91□□□□□ -1.14
VPS13C-206ENST00000558338 CTDP1Q9Y5B0 961 aaPredicted RBP7.91□□□□□ -1.14
VPS13C-206ENST00000558338 NCANO14594 1321 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 A6NNZ2 444 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 F8VZ95 297 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 CCDC188H7C350 402 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 K7ENM7 598 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 HSF2BPO75031 334 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 FTCDO95954 541 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 CXCR5P32302 372 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 ACTN2P35609 894 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 NOP2P46087 812 aaKnown RBP7.9□□□□□ -1.14
VPS13C-206ENST00000558338 JAK3P52333 1124 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 BFSP1Q12934 665 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 PPFIA1Q13136 1202 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 TUBB8Q3ZCM7 444 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 USP38Q8NB14 1042 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 FBXO22Q8NEZ5 403 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 RDM1Q8NG50 284 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 RBM46Q8TBY0 533 aaKnown RBP7.9□□□□□ -1.14
VPS13C-206ENST00000558338 ACTRT1Q8TDG2 376 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 WHAMMQ8TF30 809 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 HVCN1Q96D96 273 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 HOOK2Q96ED9 719 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 ZBED3Q96IU2 234 aaPredicted RBP7.9□□□□□ -1.14
VPS13C-206ENST00000558338 ACCSQ96QU6 501 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 PSMB7Q99436 277 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 STRA6Q9BX79 667 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 ZNF341Q9BYN7 854 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 KIAA1683Q9H0B3 1180 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 GDF3Q9NR23 364 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 RBM12Q9NTZ6 932 aaKnown RBP7.9□□□□□ -1.14
VPS13C-206ENST00000558338 APEX2Q9UBZ4 518 aa7.9□□□□□ -1.14
VPS13C-206ENST00000558338 GNEQ9Y223 722 aaKnown RBP7.9□□□□□ -1.14
VPS13C-206ENST00000558338 SFI1A8K8P3 1242 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 PGRMC1O00264 195 aaKnown RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 EVI5O60447 810 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 EXOC3O60645 756 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 DKC1O60832 514 aaKnown RBP eCLIP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 HIP1RO75146 1068 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 HEXIM1O94992 359 aaKnown RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 SYF2O95926 243 aaKnown RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 ARP10275 920 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 CAPN2P17655 700 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 SFNP31947 248 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 MATR3P43243 847 aaKnown RBP eCLIP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 QARSP47897 775 aaKnown RBP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms