RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 A0A087WZ62 844 aa12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 SLC37A4O43826 429 aa12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 DKC1O60832 514 aaKnown RBP eCLIP12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 MAFO75444 373 aaPredicted RBP12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 SFPQP23246 707 aaKnown RBP eCLIP12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 PBX3P40426 434 aa12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 PSMC5P62195 406 aa12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 RBM10P98175 930 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 SCRN1Q12765 414 aa12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 HERC4Q5GLZ8 1057 aaPredicted RBP12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 ZNF598Q86UK7 904 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 RHPN2Q8IUC4 686 aa12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 VN1R2Q8NFZ6 395 aa12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 HELQQ8TDG4 1101 aa12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 JPH2Q9BR39 696 aaPredicted RBP12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 FDXACB1Q9BRP7 624 aaPredicted RBP12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 PHF20Q9BVI0 1012 aa12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 MRPL9Q9BYD2 267 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 INO80BQ9C086 356 aaPredicted RBP12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 SPG21Q9NZD8 308 aa12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 SUCLA2Q9P2R7 463 aaPredicted RBP12.43□□□□□ -0.42
CCDC88C-213ENST00000557455 STK36Q9NRP7 1315 aa12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 HIDE1A8MVS5 230 aa12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 LOC730098B7Z3J9 87 aa12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 EML1O00423 815 aa12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 MARCH6O60337 910 aa12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 CCNT1O60563 726 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 ATF7P17544 494 aaPredicted RBP12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 PHKA2P46019 1235 aa12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 QARSP47897 775 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 ALDH7A1P49419 539 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 PPP2R5CQ13362 524 aa12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 TWF2Q6IBS0 349 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 PPP4R3AQ6IN85 833 aa12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 ANO5Q75V66 913 aa12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 TMC7Q7Z402 723 aa12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 NEK8Q86SG6 692 aa12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 ZNF410Q86VK4 478 aa12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 FAM20AQ96MK3 541 aa12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 NAP1L4Q99733 375 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 PHF7Q9BWX1 381 aaPredicted RBP12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 KCNMB3Q9NPA1 279 aa12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 CYP26B1Q9NR63 512 aa12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 PIN4Q9Y237 131 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-213ENST00000557455 ARID2Q68CP9 1835 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 PFKFB2O60825 505 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 NEFLP07196 543 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 P4HBP07237 508 aaKnown RBP12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 SKIP12755 728 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 GCFC2P16383 781 aaKnown RBP12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 HOXD11P31277 338 aaPredicted RBP12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 TECP42680 631 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 KCNC3Q14003 757 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 SMC1AQ14683 1233 aaKnown RBP12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 PLA2G4FQ68DD2 849 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 ANKRD54Q6NXT1 300 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 LLGL2Q6P1M3 1020 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 TMEM184AQ6ZMB5 413 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 PIK3AP1Q6ZUJ8 805 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 HFE2Q6ZVN8 426 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 CATSPER4Q7RTX7 472 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 KSR1Q8IVT5 923 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 EXOC8Q8IYI6 725 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 SLC39A11Q8N1S5 342 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 SLC7A3Q8WY07 619 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 EDAQ92838 391 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 RPGRIP1Q96KN7 1286 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 NLRP4Q96MN2 994 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 TRAIPQ9BWF2 469 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 VAV3Q9UKW4 847 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 TPCN1Q9ULQ1 816 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 MUC6Q6W4X9 2439 aa12.41□□□□□ -0.42
CCDC88C-213ENST00000557455 NT5C1B-RDH14C9J2C7 533 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 TBX3O15119 743 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 CA8P35219 290 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 RAB27AP51159 221 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 POLGP54098 1239 aaPredicted RBP12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 NPEPPSP55786 919 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 BCAR1P56945 870 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 BMS1Q14692 1282 aaKnown RBP12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 CBX2Q14781 532 aaPredicted RBP12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 LONRF3Q496Y0 759 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 OXER1Q8TDS5 423 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 RSPH1Q8WYR4 309 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 SUSD6Q92537 303 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 WASF1Q92558 559 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 LPPQ93052 612 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 TMEM169Q96HH4 297 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 CEP170P1Q96L14 293 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 MFSD14AQ96MC6 490 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 GJB4Q9NTQ9 266 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 FAM105AQ9NUU6 356 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 COL4A3BPQ9Y5P4 624 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 TECTAO75443 2155 aa12.4□□□□□ -0.42
CCDC88C-213ENST00000557455 CARNS1A5YM72 827 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 DTNBO60941 627 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 ZC3H11AO75152 810 aaKnown RBP eCLIP12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 BAG4O95429 457 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 HOXB8P17481 243 aaPredicted RBP12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 RNASELQ05823 741 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms