RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 RAD51AP2Q09MP3 1159 aa12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 LRIT3Q3SXY7 679 aa12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 FAM109BQ6ICB4 259 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 TMCO2Q7Z6W1 182 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 PDILTQ8N807 584 aa12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 SYT2Q8N9I0 419 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 ZBED2Q9BTP6 218 aa12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 RUSC1Q9BVN2 902 aa12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 FTHL17Q9BXU8 183 aa12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 ERVK-5Q9HDB9 667 aa12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 RCOR1Q9UKL0 485 aa12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 PCDHA7Q9UN72 937 aa12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 TRIOBPQ9H2D6 2365 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 DENND3A2RUS2 1198 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 INO80B-WBP1J3KQ70 363 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 SOX1O00570 391 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 ENPP3O14638 875 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 ZSCAN20P17040 1043 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 LIG1P18858 919 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 DDIT3P35638 169 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 STAT6P42226 847 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 RABGGTBP53611 331 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 CAPSQ13938 189 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 MCM6Q14566 821 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 RINT1Q6NUQ1 792 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 CCDC73Q6ZRK6 1079 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 CATSPER4Q7RTX7 472 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 SRGAP1Q7Z6B7 1085 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 GPBP1Q86WP2 473 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 PHOSPHO2Q8TCD6 241 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 LEO1Q8WVC0 666 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 RAD54LQ92698 747 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 KIFAP3Q92845 792 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 LRCH3Q96II8 777 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 IFT74Q96LB3 600 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 FAM13BQ9NYF5 915 aa12.69□□□□□ -0.38
CCDC88C-212ENST00000556767 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 HIP1RO75146 1068 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 ERLIN2O94905 339 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 PBX2P40425 430 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 SLC12A3P55017 1021 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 SMAD3P84022 425 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 CACNB1Q02641 598 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 PPP2R5AQ15172 486 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 SHC4Q6S5L8 630 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 C1orf186Q6ZWK4 172 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 HERC6Q8IVU3 1022 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 ZBTB8OSQ8IWT0 167 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 DEPTORQ8TB45 409 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 LARP4BQ92615 738 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 DRC1Q96MC2 740 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 ADAM2Q99965 735 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 SCAND2PQ9GZW5 306 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 TMX1Q9H3N1 280 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 IFT122Q9HBG6 1241 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 TSHZ2Q9NRE2 1034 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 BLOC1S4Q9NUP1 217 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 STK17AQ9UEE5 414 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 MSRAQ9UJ68 235 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 LRFN2Q9ULH4 789 aa12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 CIZ1Q9ULV3 898 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 RBM19Q9Y4C8 960 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-212ENST00000556767 MICAL3Q7RTP6 2002 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 NPHP3-ACAD11A0A0J9YXS1 232 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 CCDC169A6NNP5 214 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 SFI1A8K8P3 1242 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 TLL1O43897 1013 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 PEX3P56589 373 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 PTENP60484 403 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 RAB30Q15771 203 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 TMEM132AQ24JP5 1023 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 AXDND1Q5T1B0 1012 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 RTN4RL1Q86UN2 441 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 LRRC15Q8TF66 581 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 LINC01599Q8WXQ3 324 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 BSNDQ8WZ55 320 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 DHX58Q96C10 678 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 TIPINQ9BVW5 301 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 PBX4Q9BYU1 374 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 ZHX3Q9H4I2 956 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 MINDY3Q9H8M7 445 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 GDPD2Q9HCC8 539 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 KCND2Q9NZV8 630 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 PIN4Q9Y237 131 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 DNAH12Q6ZR08 3092 aa12.67□□□□□ -0.38
CCDC88C-212ENST00000556767 A0A087X0B3 334 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 MGEA5O60502 916 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 FAM13AO94988 1023 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 MYOGP15173 224 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 GUCY2CP25092 1073 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 NAMPTP43490 491 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 FXR1P51114 621 aaKnown RBP eCLIP12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 NCBP1Q09161 790 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 DMP1Q13316 513 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 TWF2Q6IBS0 349 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 SV2BQ7L1I2 683 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 RNF169Q8NCN4 708 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 KIFC3Q9BVG8 833 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 C2orf40Q9H1Z8 148 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 TSPYL2Q9H2G4 693 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms