RNA–Protein interactions for RNA: ENST00000556433.5

ACTN1-220, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 1,259 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-220ENST00000556433 LRRC43Q8N309 656 aa25.35■■□□□ 1.65
ACTN1-220ENST00000556433 NAP1L4Q99733 375 aaKnown RBP25.35■■□□□ 1.65
ACTN1-220ENST00000556433 CHST12Q9NRB3 414 aa25.35■■□□□ 1.65
ACTN1-220ENST00000556433 DKC1O60832 514 aaKnown RBP eCLIP25.34■■□□□ 1.651e-7■■■■■ 54.2
ACTN1-220ENST00000556433 PLCB3Q01970 1234 aa25.34■■□□□ 1.65
ACTN1-220ENST00000556433 CLLU1OSQ5K130 101 aa25.34■■□□□ 1.65
ACTN1-220ENST00000556433 KCNT2Q6UVM3 1135 aa25.34■■□□□ 1.65
ACTN1-220ENST00000556433 ZNF598Q86UK7 904 aaKnown RBP25.34■■□□□ 1.65
ACTN1-220ENST00000556433 NECAB1Q8N987 351 aa25.34■■□□□ 1.65
ACTN1-220ENST00000556433 MRPS27Q92552 414 aaKnown RBP25.34■■□□□ 1.65
ACTN1-220ENST00000556433 HAS1Q92839 578 aa25.34■■□□□ 1.65
ACTN1-220ENST00000556433 ZNF558Q96NG5 402 aa25.34■■□□□ 1.65
ACTN1-220ENST00000556433 JPH2Q9BR39 696 aaPredicted RBP25.34■■□□□ 1.65
ACTN1-220ENST00000556433 INO80BQ9C086 356 aaPredicted RBP25.34■■□□□ 1.65
ACTN1-220ENST00000556433 CYP26B1Q9NR63 512 aa25.34■■□□□ 1.65
ACTN1-220ENST00000556433 LZTS1Q9Y250 596 aa25.34■■□□□ 1.65
ACTN1-220ENST00000556433 FSCN2O14926 492 aa25.33■■□□□ 1.65
ACTN1-220ENST00000556433 TBX3O15119 743 aa25.33■■□□□ 1.65
ACTN1-220ENST00000556433 DCXO43602 365 aa25.33■■□□□ 1.65
ACTN1-220ENST00000556433 EYA4O95677 639 aa25.33■■□□□ 1.65
ACTN1-220ENST00000556433 GLP2RO95838 553 aa25.33■■□□□ 1.65
ACTN1-220ENST00000556433 P4HBP07237 508 aaKnown RBP25.33■■□□□ 1.65
ACTN1-220ENST00000556433 SFPQP23246 707 aaKnown RBP eCLIP25.33■■□□□ 1.657e-7■■■■□ 21
ACTN1-220ENST00000556433 NPEPPSP55786 919 aa25.33■■□□□ 1.65
ACTN1-220ENST00000556433 EARS2Q5JPH6 523 aaKnown RBP25.33■■□□□ 1.65
ACTN1-220ENST00000556433 ZNF410Q86VK4 478 aa25.33■■□□□ 1.65
ACTN1-220ENST00000556433 KSR1Q8IVT5 923 aa25.33■■□□□ 1.65
ACTN1-220ENST00000556433 POP1Q99575 1024 aaKnown RBP25.33■■□□□ 1.65
ACTN1-220ENST00000556433 BARX2Q9UMQ3 279 aaPredicted RBP25.33■■□□□ 1.65
ACTN1-220ENST00000556433 PLXNA4Q9HCM2 1894 aa25.32■■□□□ 1.64
ACTN1-220ENST00000556433 FDPSP14324 419 aaKnown RBP25.32■■□□□ 1.64
ACTN1-220ENST00000556433 PBX3P40426 434 aa25.32■■□□□ 1.64
ACTN1-220ENST00000556433 KRT17Q04695 432 aa25.32■■□□□ 1.64
ACTN1-220ENST00000556433 COASYQ13057 564 aa25.32■■□□□ 1.64
ACTN1-220ENST00000556433 EPHA7Q15375 998 aa25.32■■□□□ 1.64
ACTN1-220ENST00000556433 DUSP6Q16828 381 aa25.32■■□□□ 1.64
ACTN1-220ENST00000556433 HELQQ8TDG4 1101 aa25.32■■□□□ 1.64
ACTN1-220ENST00000556433 NLRP4Q96MN2 994 aa25.32■■□□□ 1.64
ACTN1-220ENST00000556433 CDCA3Q99618 268 aaPredicted RBP25.32■■□□□ 1.64
ACTN1-220ENST00000556433 SPG21Q9NZD8 308 aa25.32■■□□□ 1.64
ACTN1-220ENST00000556433 ATF7P17544 494 aaPredicted RBP25.31■■□□□ 1.64
ACTN1-220ENST00000556433 PPM1AP35813 382 aa25.31■■□□□ 1.64
ACTN1-220ENST00000556433 KRT2P35908 639 aa25.31■■□□□ 1.64
ACTN1-220ENST00000556433 ME3Q16798 604 aa25.31■■□□□ 1.64
ACTN1-220ENST00000556433 PLPP4Q5VZY2 271 aa25.31■■□□□ 1.64
ACTN1-220ENST00000556433 POTEDQ86YR6 584 aa25.31■■□□□ 1.64
ACTN1-220ENST00000556433 ZNF579Q8NAF0 562 aaKnown RBP25.31■■□□□ 1.64
ACTN1-220ENST00000556433 SMRP1Q8NCR6 262 aa25.31■■□□□ 1.64
ACTN1-220ENST00000556433 CEP170P1Q96L14 293 aa25.31■■□□□ 1.64
ACTN1-220ENST00000556433 TCF25Q9BQ70 676 aa25.31■■□□□ 1.64
ACTN1-220ENST00000556433 WRAP73Q9P2S5 460 aaPredicted RBP25.31■■□□□ 1.64
ACTN1-220ENST00000556433 HCN4Q9Y3Q4 1203 aa25.31■■□□□ 1.64
ACTN1-220ENST00000556433 FAM205CA6NFA0 338 aa25.3■■□□□ 1.64
ACTN1-220ENST00000556433 BAG4O95429 457 aaKnown RBP25.3■■□□□ 1.64
ACTN1-220ENST00000556433 PHKA2P46019 1235 aa25.3■■□□□ 1.64
ACTN1-220ENST00000556433 RBM10P98175 930 aaKnown RBP25.3■■□□□ 1.64
ACTN1-220ENST00000556433 NR5A1Q13285 461 aa25.3■■□□□ 1.64
ACTN1-220ENST00000556433 ERICH6BQ5W0A0 696 aa25.3■■□□□ 1.64
ACTN1-220ENST00000556433 TWF2Q6IBS0 349 aaKnown RBP25.3■■□□□ 1.64
ACTN1-220ENST00000556433 NCAPH2Q6IBW4 605 aa25.3■■□□□ 1.64
ACTN1-220ENST00000556433 CATSPER4Q7RTX7 472 aa25.3■■□□□ 1.64
ACTN1-220ENST00000556433 SLC7A3Q8WY07 619 aa25.3■■□□□ 1.64
ACTN1-220ENST00000556433 BRMS1Q9HCU9 246 aa25.3■■□□□ 1.64
ACTN1-220ENST00000556433 ENTPD7Q9NQZ7 604 aa25.3■■□□□ 1.64
ACTN1-220ENST00000556433 PIN4Q9Y237 131 aaKnown RBP25.3■■□□□ 1.64
ACTN1-220ENST00000556433 LARGE1O95461 756 aa25.29■■□□□ 1.64
ACTN1-220ENST00000556433 POLGP54098 1239 aaPredicted RBP25.29■■□□□ 1.64
ACTN1-220ENST00000556433 C4orf19Q8IY42 314 aa25.29■■□□□ 1.64
ACTN1-220ENST00000556433 EXOC8Q8IYI6 725 aa25.29■■□□□ 1.64
ACTN1-220ENST00000556433 SLFN12Q8IYM2 578 aa25.29■■□□□ 1.64
ACTN1-220ENST00000556433 GTF3C6Q969F1 213 aa25.29■■□□□ 1.64
ACTN1-220ENST00000556433 LXNQ9BS40 222 aa25.29■■□□□ 1.64
ACTN1-220ENST00000556433 TRAIPQ9BWF2 469 aa25.29■■□□□ 1.64
ACTN1-220ENST00000556433 MRPL9Q9BYD2 267 aaKnown RBP25.29■■□□□ 1.64
ACTN1-220ENST00000556433 NGRNQ9NPE2 291 aaKnown RBP25.29■■□□□ 1.64
ACTN1-220ENST00000556433 RGL1Q9NZL6 768 aa25.29■■□□□ 1.64
ACTN1-220ENST00000556433 PPME1Q9Y570 386 aa25.29■■□□□ 1.64
ACTN1-220ENST00000556433 FSD2A1L4K1 749 aa25.28■■□□□ 1.64
ACTN1-220ENST00000556433 PRR33A8MZF0 331 aa25.28■■□□□ 1.64
ACTN1-220ENST00000556433 SKIP12755 728 aa25.28■■□□□ 1.64
ACTN1-220ENST00000556433 LONRF3Q496Y0 759 aa25.28■■□□□ 1.64
ACTN1-220ENST00000556433 OTUD6AQ7L8S5 288 aa25.28■■□□□ 1.64
ACTN1-220ENST00000556433 TMC7Q7Z402 723 aa25.28■■□□□ 1.64
ACTN1-220ENST00000556433 SLC39A11Q8N1S5 342 aa25.28■■□□□ 1.64
ACTN1-220ENST00000556433 VN1R2Q8NFZ6 395 aa25.28■■□□□ 1.64
ACTN1-220ENST00000556433 PRPF31Q8WWY3 499 aaKnown RBP25.28■■□□□ 1.64
ACTN1-220ENST00000556433 TMEM143Q96AN5 459 aa25.28■■□□□ 1.64
ACTN1-220ENST00000556433 FAM122AQ96E09 287 aa25.28■■□□□ 1.64
ACTN1-220ENST00000556433 DYDC2Q96IM9 177 aa25.28■■□□□ 1.64
ACTN1-220ENST00000556433 USP15Q9Y4E8 981 aaPredicted RBP25.28■■□□□ 1.64
ACTN1-220ENST00000556433 COL4A3BPQ9Y5P4 624 aa25.28■■□□□ 1.64
ACTN1-220ENST00000556433 HIDE1A8MVS5 230 aa25.27■■□□□ 1.64
ACTN1-220ENST00000556433 SRGAP2CP0DJJ0 459 aa25.27■■□□□ 1.64
ACTN1-220ENST00000556433 YWHABP31946 246 aaKnown RBP25.27■■□□□ 1.64
ACTN1-220ENST00000556433 RFC5P40937 340 aa25.27■■□□□ 1.64
ACTN1-220ENST00000556433 ALDH7A1P49419 539 aaKnown RBP25.27■■□□□ 1.64
ACTN1-220ENST00000556433 NEK4P51957 841 aa25.27■■□□□ 1.64
ACTN1-220ENST00000556433 CTTNQ14247 550 aaKnown RBP25.27■■□□□ 1.64
ACTN1-220ENST00000556433 RNF135Q8IUD6 432 aa25.27■■□□□ 1.64
ACTN1-220ENST00000556433 PSPC1Q8WXF1 523 aaKnown RBP25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms