RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 L2HGDHQ9H9P8 463 aa7.57□□□□□ -1.2
LINC00643-204ENST00000555934 IFT122Q9HBG6 1241 aa7.57□□□□□ -1.2
LINC00643-204ENST00000555934 CD320Q9NPF0 282 aa7.57□□□□□ -1.2
LINC00643-204ENST00000555934 EVLQ9UI08 416 aaPredicted RBP7.57□□□□□ -1.2
LINC00643-204ENST00000555934 E2F8A0AVK6 867 aa7.56□□□□□ -1.2
LINC00643-204ENST00000555934 PRPF3O43395 683 aaKnown RBP7.56□□□□□ -1.2
LINC00643-204ENST00000555934 CYP7B1O75881 506 aa7.56□□□□□ -1.2
LINC00643-204ENST00000555934 RAP1GAPP47736 663 aa7.56□□□□□ -1.2
LINC00643-204ENST00000555934 MAP3K12Q12852 859 aa7.56□□□□□ -1.2
LINC00643-204ENST00000555934 SPIDRQ14159 915 aa7.56□□□□□ -1.2
LINC00643-204ENST00000555934 ZNF124Q15973 351 aa7.56□□□□□ -1.2
LINC00643-204ENST00000555934 MUM1Q2TAK8 710 aa7.56□□□□□ -1.2
LINC00643-204ENST00000555934 PRR31Q5SQ13 230 aa7.56□□□□□ -1.2
LINC00643-204ENST00000555934 TSPEARQ8WU66 669 aa7.56□□□□□ -1.2
LINC00643-204ENST00000555934 HIST1H2AHQ96KK5 128 aa7.56□□□□□ -1.2
LINC00643-204ENST00000555934 HIST1H2AJQ99878 128 aa7.56□□□□□ -1.2
LINC00643-204ENST00000555934 SPATA25Q9BR10 227 aa7.56□□□□□ -1.2
LINC00643-204ENST00000555934 WNT8AQ9H1J5 351 aa7.56□□□□□ -1.2
LINC00643-204ENST00000555934 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.56□□□□□ -1.2
LINC00643-204ENST00000555934 CDY2AQ9Y6F7 541 aa7.56□□□□□ -1.2
LINC00643-204ENST00000555934 A0A0G2JNJ9 132 aa7.55□□□□□ -1.2
LINC00643-204ENST00000555934 MTHFD2P13995 350 aa7.55□□□□□ -1.2
LINC00643-204ENST00000555934 ZNF28P17035 718 aa7.55□□□□□ -1.2
LINC00643-204ENST00000555934 RPL13P26373 211 aaKnown RBP7.55□□□□□ -1.2
LINC00643-204ENST00000555934 DLX2Q07687 328 aaPredicted RBP7.55□□□□□ -1.2
LINC00643-204ENST00000555934 TCIRG1Q13488 830 aa7.55□□□□□ -1.2
LINC00643-204ENST00000555934 MCTP2Q6DN12 878 aa7.55□□□□□ -1.2
LINC00643-204ENST00000555934 CXXC5Q7LFL8 322 aaKnown RBP7.55□□□□□ -1.2
LINC00643-204ENST00000555934 BMP8AQ7Z5Y6 402 aa7.55□□□□□ -1.2
LINC00643-204ENST00000555934 C14orf80Q86SX3 495 aa7.55□□□□□ -1.2
LINC00643-204ENST00000555934 SLC41A1Q8IVJ1 513 aa7.55□□□□□ -1.2
LINC00643-204ENST00000555934 CMTR2Q8IYT2 770 aaKnown RBP7.55□□□□□ -1.2
LINC00643-204ENST00000555934 HSPBAP1Q96EW2 488 aa7.55□□□□□ -1.2
LINC00643-204ENST00000555934 LRGUKQ96M69 825 aa7.55□□□□□ -1.2
LINC00643-204ENST00000555934 ACE2Q9BYF1 805 aaPredicted RBP7.55□□□□□ -1.2
LINC00643-204ENST00000555934 ZNF277Q9NRM2 450 aaPredicted RBP7.55□□□□□ -1.2
LINC00643-204ENST00000555934 SAE1Q9UBE0 346 aaPredicted RBP7.55□□□□□ -1.2
LINC00643-204ENST00000555934 Q9UFV3 132 aa7.55□□□□□ -1.2
LINC00643-204ENST00000555934 A0A0A6YYK5 440 aaPredicted RBP7.54□□□□□ -1.2
LINC00643-204ENST00000555934 NPIPB6E9PJ23 425 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 MAFGO15525 162 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 NDUFS2O75306 463 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 ZRANB2O95218 330 aaKnown RBP eCLIP7.54□□□□□ -1.2
LINC00643-204ENST00000555934 XPAP23025 273 aaPredicted RBP7.54□□□□□ -1.2
LINC00643-204ENST00000555934 SLC5A3P53794 718 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 RRADP55042 308 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 KIF23Q02241 960 aaPredicted RBP7.54□□□□□ -1.2
LINC00643-204ENST00000555934 MGAT5Q09328 741 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 KCNA10Q16322 511 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 VWA3BQ502W6 1294 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 MBNL2Q5VZF2 373 aaKnown RBP7.54□□□□□ -1.2
LINC00643-204ENST00000555934 NOL8Q76FK4 1167 aaKnown RBP7.54□□□□□ -1.2
LINC00643-204ENST00000555934 SAPCD2Q86UD0 394 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 BCL6BQ8N143 479 aaPredicted RBP7.54□□□□□ -1.2
LINC00643-204ENST00000555934 MYO1HQ8N1T3 1032 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 FDXACB1Q9BRP7 624 aaPredicted RBP7.54□□□□□ -1.2
LINC00643-204ENST00000555934 SOX7Q9BT81 388 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 POLR3BQ9NW08 1133 aaPredicted RBP7.54□□□□□ -1.2
LINC00643-204ENST00000555934 NTMQ9P121 344 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 TUBD1Q9UJT1 453 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 ZBTB21Q9ULJ3 1066 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 SYNPO2Q9UMS6 1093 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 GIT1Q9Y2X7 761 aa7.54□□□□□ -1.2
LINC00643-204ENST00000555934 RFXAPO00287 272 aa7.53□□□□□ -1.2
LINC00643-204ENST00000555934 CUTAO60888 179 aa7.53□□□□□ -1.2
LINC00643-204ENST00000555934 KLHL18O94889 574 aa7.53□□□□□ -1.2
LINC00643-204ENST00000555934 HMGCRP04035 888 aa7.53□□□□□ -1.2
LINC00643-204ENST00000555934 CYP1A1P04798 512 aaPredicted RBP7.53□□□□□ -1.2
LINC00643-204ENST00000555934 HNRNPLP14866 589 aaKnown RBP eCLIP7.53□□□□□ -1.2
LINC00643-204ENST00000555934 LINC00310P59036 64 aa7.53□□□□□ -1.2
LINC00643-204ENST00000555934 KRT85P78386 507 aa7.53□□□□□ -1.2
LINC00643-204ENST00000555934 HSP90AB2PQ58FF8 381 aa7.53□□□□□ -1.2
LINC00643-204ENST00000555934 TMEM240Q5SV17 173 aa7.53□□□□□ -1.2
LINC00643-204ENST00000555934 TMEM200BQ69YZ2 307 aa7.53□□□□□ -1.2
LINC00643-204ENST00000555934 GPR155Q7Z3F1 870 aa7.53□□□□□ -1.2
LINC00643-204ENST00000555934 DMRT3Q9NQL9 472 aa7.53□□□□□ -1.2
LINC00643-204ENST00000555934 DNM3Q9UQ16 869 aa7.53□□□□□ -1.2
LINC00643-204ENST00000555934 ANKRD6Q9Y2G4 727 aa7.53□□□□□ -1.2
LINC00643-204ENST00000555934 FFAR3O14843 346 aa7.52□□□□□ -1.21
LINC00643-204ENST00000555934 CHGBP05060 677 aa7.52□□□□□ -1.21
LINC00643-204ENST00000555934 POLD1P28340 1107 aa7.52□□□□□ -1.21
LINC00643-204ENST00000555934 SARSP49591 514 aaKnown RBP7.52□□□□□ -1.21
LINC00643-204ENST00000555934 AFF3P51826 1226 aaKnown RBP7.52□□□□□ -1.21
LINC00643-204ENST00000555934 TOP3AQ13472 1001 aaPredicted RBP7.52□□□□□ -1.21
LINC00643-204ENST00000555934 MLC1Q15049 377 aa7.52□□□□□ -1.21
LINC00643-204ENST00000555934 ZNF385BQ569K4 471 aa7.52□□□□□ -1.21
LINC00643-204ENST00000555934 LMBR1LQ6UX01 489 aa7.52□□□□□ -1.21
LINC00643-204ENST00000555934 DACT3Q96B18 629 aaPredicted RBP7.52□□□□□ -1.21
LINC00643-204ENST00000555934 SERPINB13Q9UIV8 391 aa7.52□□□□□ -1.21
LINC00643-204ENST00000555934 FBXO10Q9UK96 956 aa7.52□□□□□ -1.21
LINC00643-204ENST00000555934 FAM184BQ9ULE4 1060 aa7.52□□□□□ -1.21
LINC00643-204ENST00000555934 PTPN22Q9Y2R2 807 aa7.52□□□□□ -1.21
LINC00643-204ENST00000555934 ATF3P18847 181 aa7.51□□□□□ -1.21
LINC00643-204ENST00000555934 CD69Q07108 199 aa7.51□□□□□ -1.21
LINC00643-204ENST00000555934 UAP1L1Q3KQV9 507 aa7.51□□□□□ -1.21
LINC00643-204ENST00000555934 FAM102BQ5T8I3 360 aa7.51□□□□□ -1.21
LINC00643-204ENST00000555934 LARP4Q71RC2 724 aaKnown RBP eCLIP7.51□□□□□ -1.21
LINC00643-204ENST00000555934 RTKN2Q8IZC4 609 aa7.51□□□□□ -1.21
LINC00643-204ENST00000555934 IFNL2Q8IZJ0 200 aa7.51□□□□□ -1.21
LINC00643-204ENST00000555934 RSAD2Q8WXG1 361 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms