RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 XRCC6P12956 609 aaKnown RBP eCLIP15.27■□□□□ 0.04
SHMT2-219ENST00000555563 SFPQP23246 707 aaKnown RBP eCLIP15.27■□□□□ 0.04
SHMT2-219ENST00000555563 GATMP50440 423 aa15.27■□□□□ 0.04
SHMT2-219ENST00000555563 RESTQ13127 1097 aa15.27■□□□□ 0.04
SHMT2-219ENST00000555563 GRB10Q13322 594 aa15.27■□□□□ 0.04
SHMT2-219ENST00000555563 PDIA5Q14554 519 aa15.27■□□□□ 0.04
SHMT2-219ENST00000555563 RNF149Q8NC42 400 aa15.27■□□□□ 0.04
SHMT2-219ENST00000555563 POLR3FQ9H1D9 316 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-219ENST00000555563 CHD9Q3L8U1 2897 aa15.27■□□□□ 0.03
SHMT2-219ENST00000555563 ARHGEF35A5YM69 484 aa15.26■□□□□ 0.03
SHMT2-219ENST00000555563 LPXNO60711 386 aa15.26■□□□□ 0.03
SHMT2-219ENST00000555563 MUTP22033 750 aa15.26■□□□□ 0.03
SHMT2-219ENST00000555563 CDC25AP30304 524 aa15.26■□□□□ 0.03
SHMT2-219ENST00000555563 BTG3Q14201 252 aaPredicted RBP15.26■□□□□ 0.03
SHMT2-219ENST00000555563 PAN2Q504Q3 1202 aaKnown RBP15.26■□□□□ 0.03
SHMT2-219ENST00000555563 EPC2Q52LR7 807 aa15.26■□□□□ 0.03
SHMT2-219ENST00000555563 CMTR2Q8IYT2 770 aaKnown RBP15.26■□□□□ 0.03
SHMT2-219ENST00000555563 FIBCD1Q8N539 461 aa15.26■□□□□ 0.03
SHMT2-219ENST00000555563 FBXO22Q8NEZ5 403 aa15.26■□□□□ 0.03
SHMT2-219ENST00000555563 ASAP3Q8TDY4 903 aa15.26■□□□□ 0.03
SHMT2-219ENST00000555563 SYMPKQ92797 1274 aaKnown RBP15.26■□□□□ 0.03
SHMT2-219ENST00000555563 MMTAG2Q9BU76 263 aaKnown RBP15.26■□□□□ 0.03
SHMT2-219ENST00000555563 INO80BQ9C086 356 aaPredicted RBP15.26■□□□□ 0.03
SHMT2-219ENST00000555563 MINDY3Q9H8M7 445 aa15.26■□□□□ 0.03
SHMT2-219ENST00000555563 GPRC5CQ9NQ84 441 aa15.26■□□□□ 0.03
SHMT2-219ENST00000555563 DDX19AQ9NUU7 478 aaKnown RBP15.26■□□□□ 0.03
SHMT2-219ENST00000555563 KIAA1024Q9UPX6 916 aa15.26■□□□□ 0.03
SHMT2-219ENST00000555563 MTMR6Q9Y217 621 aa15.26■□□□□ 0.03
SHMT2-219ENST00000555563 PCDHB7Q9Y5E2 793 aa15.26■□□□□ 0.03
SHMT2-219ENST00000555563 STK24Q9Y6E0 443 aa15.26■□□□□ 0.03
SHMT2-219ENST00000555563 VWA3AA6NCI4 1184 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 FGFR1P11362 822 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 ZSCAN20P17040 1043 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-219ENST00000555563 GLRA2P23416 452 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 ARL2P36404 184 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 PHKA2P46019 1235 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 FAM189BP81408 668 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 CAPSQ13938 189 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 MXD4Q14582 209 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-219ENST00000555563 KRT79Q5XKE5 535 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 ARL6IP4Q66PJ3 421 aaKnown RBP15.25■□□□□ 0.03
SHMT2-219ENST00000555563 PADI6Q6TGC4 694 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 MAEAQ7L5Y9 396 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 CATSPER4Q7RTX7 472 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 SRGAP1Q7Z6B7 1085 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 TMEM192Q8IY95 271 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 MCPH1Q8NEM0 835 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 SAMD11Q96NU1 681 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 BHMT2Q9H2M3 363 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 AGPAT5Q9NUQ2 364 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 TMEM161AQ9NX61 479 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 PIN4Q9Y237 131 aaKnown RBP15.25■□□□□ 0.03
SHMT2-219ENST00000555563 MTCH2Q9Y6C9 303 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 MRPL42Q9Y6G3 142 aaKnown RBP15.25■□□□□ 0.03
SHMT2-219ENST00000555563 CHD7Q9P2D1 2997 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 MYO9BQ13459 2157 aa15.25■□□□□ 0.03
SHMT2-219ENST00000555563 FNDC1Q4ZHG4 1894 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-219ENST00000555563 ASAP2O43150 1006 aa15.24■□□□□ 0.03
SHMT2-219ENST00000555563 STX6O43752 255 aa15.24■□□□□ 0.03
SHMT2-219ENST00000555563 BMP15O95972 392 aa15.24■□□□□ 0.03
SHMT2-219ENST00000555563 CTNNB1P35222 781 aa15.24■□□□□ 0.03
SHMT2-219ENST00000555563 TFDP1Q14186 410 aa15.24■□□□□ 0.03
SHMT2-219ENST00000555563 SF3A1Q15459 793 aaKnown RBP15.24■□□□□ 0.03
SHMT2-219ENST00000555563 FAM173BQ6P4H8 233 aa15.24■□□□□ 0.03
SHMT2-219ENST00000555563 ECHDC2Q86YB7 292 aa15.24■□□□□ 0.03
SHMT2-219ENST00000555563 MICALL1Q8N3F8 863 aa15.24■□□□□ 0.03
SHMT2-219ENST00000555563 CLP1Q92989 425 aaKnown RBP15.24■□□□□ 0.03
SHMT2-219ENST00000555563 ELAC1Q9H777 363 aaKnown RBP15.24■□□□□ 0.03
SHMT2-219ENST00000555563 PRDM6Q9NQX0 595 aa15.24■□□□□ 0.03
SHMT2-219ENST00000555563 CHST12Q9NRB3 414 aa15.24■□□□□ 0.03
SHMT2-219ENST00000555563 RNF216Q9NWF9 866 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-219ENST00000555563 DACT1Q9NYF0 836 aa15.24■□□□□ 0.03
SHMT2-219ENST00000555563 MYH15Q9Y2K3 1946 aa15.23■□□□□ 0.03
SHMT2-219ENST00000555563 GTPBP6O43824 516 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-219ENST00000555563 HSP90AA1P07900 732 aaKnown RBP15.23■□□□□ 0.03
SHMT2-219ENST00000555563 ATF7P17544 494 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-219ENST00000555563 CYP11B2P19099 503 aa15.23■□□□□ 0.03
SHMT2-219ENST00000555563 POU3F3P20264 500 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-219ENST00000555563 PTENP60484 403 aa15.23■□□□□ 0.03
SHMT2-219ENST00000555563 FAM102BQ5T8I3 360 aa15.23■□□□□ 0.03
SHMT2-219ENST00000555563 TWF2Q6IBS0 349 aaKnown RBP15.23■□□□□ 0.03
SHMT2-219ENST00000555563 IFNLR1Q8IU57 520 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-219ENST00000555563 RNF169Q8NCN4 708 aa15.23■□□□□ 0.03
SHMT2-219ENST00000555563 PPM1EQ8WY54 764 aa15.23■□□□□ 0.03
SHMT2-219ENST00000555563 RNF19AQ9NV58 838 aa15.23■□□□□ 0.03
SHMT2-219ENST00000555563 RWDD3Q9Y3V2 267 aa15.23■□□□□ 0.03
SHMT2-219ENST00000555563 A0A0U1RQF3 1178 aa15.22■□□□□ 0.03
SHMT2-219ENST00000555563 LRRIQ4A6NIV6 560 aa15.22■□□□□ 0.03
SHMT2-219ENST00000555563 TBKBP1A7MCY6 615 aa15.22■□□□□ 0.03
SHMT2-219ENST00000555563 E9PMD0 336 aa15.22■□□□□ 0.03
SHMT2-219ENST00000555563 GRIN1Q05586 938 aa15.22■□□□□ 0.03
SHMT2-219ENST00000555563 MBTD1Q05BQ5 628 aa15.22■□□□□ 0.03
SHMT2-219ENST00000555563 ZRSR1Q15695 479 aaKnown RBP15.22■□□□□ 0.03
SHMT2-219ENST00000555563 CCDC85BQ15834 202 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-219ENST00000555563 KCNK18Q7Z418 384 aa15.22■□□□□ 0.03
SHMT2-219ENST00000555563 ZNF598Q86UK7 904 aaKnown RBP15.22■□□□□ 0.03
SHMT2-219ENST00000555563 BSNDQ8WZ55 320 aa15.22■□□□□ 0.03
SHMT2-219ENST00000555563 PNMA5Q96PV4 448 aa15.22■□□□□ 0.03
SHMT2-219ENST00000555563 TRAIPQ9BWF2 469 aa15.22■□□□□ 0.03
SHMT2-219ENST00000555563 HCSTQ9UBK5 93 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms