RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 GPRC5CQ9NQ84 441 aa15.79■□□□□ 0.12
SHMT2-217ENST00000555116 CSDE1O75534 798 aaKnown RBP15.78■□□□□ 0.12
SHMT2-217ENST00000555116 GJB5O95377 273 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 YEATS4O95619 227 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 SRGAP2CP0DJJ0 459 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 FGFR4P22455 802 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 GLRA2P23416 452 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 MXD4Q14582 209 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-217ENST00000555116 SPECC1Q5M775 1068 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 MAEAQ7L5Y9 396 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 LRRC15Q8TF66 581 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 TOP1MTQ969P6 601 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 CDK5RAP3Q96JB5 506 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 CCSER1Q9C0I3 900 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 MSRAQ9UJ68 235 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 ATL3Q6DD88 541 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 KRI1Q8N9T8 703 aaKnown RBP15.78■□□□□ 0.12
SHMT2-217ENST00000555116 RNF149Q8NC42 400 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 TIFAQ96CG3 184 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 CALML4Q96GE6 196 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 EPSTI1Q96J88 318 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 NKX2-4Q9H2Z4 354 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 MINDY3Q9H8M7 445 aa15.78■□□□□ 0.12
SHMT2-217ENST00000555116 SPTLC2O15270 562 aa15.77■□□□□ 0.11
SHMT2-217ENST00000555116 PPP6R2O75170 966 aa15.77■□□□□ 0.11
SHMT2-217ENST00000555116 DNM1Q05193 864 aaKnown RBP15.77■□□□□ 0.11
SHMT2-217ENST00000555116 CAPSQ13938 189 aa15.77■□□□□ 0.11
SHMT2-217ENST00000555116 KARSQ15046 597 aaKnown RBP15.77■□□□□ 0.11
SHMT2-217ENST00000555116 FAM117BQ6P1L5 589 aa15.77■□□□□ 0.11
SHMT2-217ENST00000555116 SRGAP1Q7Z6B7 1085 aa15.77■□□□□ 0.11
SHMT2-217ENST00000555116 IFNLR1Q8IU57 520 aaPredicted RBP15.77■□□□□ 0.11
SHMT2-217ENST00000555116 CRIPAKQ8N1N5 446 aa15.77■□□□□ 0.11
SHMT2-217ENST00000555116 ADAM2Q99965 735 aa15.77■□□□□ 0.11
SHMT2-217ENST00000555116 RUSC1Q9BVN2 902 aa15.77■□□□□ 0.11
SHMT2-217ENST00000555116 INO80BQ9C086 356 aaPredicted RBP15.77■□□□□ 0.11
SHMT2-217ENST00000555116 TTYH1Q9H313 450 aaPredicted RBP15.77■□□□□ 0.11
SHMT2-217ENST00000555116 RGS18Q9NS28 235 aa15.77■□□□□ 0.11
SHMT2-217ENST00000555116 COL4A6Q14031 1691 aa15.77■□□□□ 0.11
SHMT2-217ENST00000555116 FNDC1Q4ZHG4 1894 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-217ENST00000555116 SZT2Q5T011 3432 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 TMEM265A0A087WTH1 108 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 TLL1O43897 1013 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 SLC12A3P55017 1021 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 PTENP60484 403 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 HTRA4P83105 476 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-217ENST00000555116 POU5F1BQ06416 359 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 FAM102BQ5T8I3 360 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 RINT1Q6NUQ1 792 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 C1orf186Q6ZWK4 172 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 Q7L0L9 218 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 SYT2Q8N9I0 419 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-217ENST00000555116 BSNDQ8WZ55 320 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 SYMPKQ92797 1274 aaKnown RBP15.76■□□□□ 0.11
SHMT2-217ENST00000555116 BLOC1S4Q9NUP1 217 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 C9IYK1 514 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 UPP2O95045 317 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 PLCG1P19174 1290 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 SFPQP23246 707 aaKnown RBP eCLIP15.76■□□□□ 0.11
SHMT2-217ENST00000555116 MCM4P33991 863 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 PHKA2P46019 1235 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 TFDP1Q14186 410 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 RAD9AQ99638 391 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 ZBED2Q9BTP6 218 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 POLD4Q9HCU8 107 aa15.76■□□□□ 0.11
SHMT2-217ENST00000555116 NLRC5Q86WI3 1866 aa15.75■□□□□ 0.11
SHMT2-217ENST00000555116 LCHNA4D1U4 455 aa15.75■□□□□ 0.11
SHMT2-217ENST00000555116 ARHGEF15O94989 841 aa15.75■□□□□ 0.11
SHMT2-217ENST00000555116 PLA2G4BP0C869 781 aa15.75■□□□□ 0.11
SHMT2-217ENST00000555116 SARSP49591 514 aaKnown RBP15.75■□□□□ 0.11
SHMT2-217ENST00000555116 FAM189BP81408 668 aa15.75■□□□□ 0.11
SHMT2-217ENST00000555116 ZNF697Q5TEC3 545 aa15.75■□□□□ 0.11
SHMT2-217ENST00000555116 DAW1Q8N136 415 aa15.75■□□□□ 0.11
SHMT2-217ENST00000555116 CHAMP1Q96JM3 812 aa15.75■□□□□ 0.11
SHMT2-217ENST00000555116 NFKBIZQ9BYH8 718 aa15.75■□□□□ 0.11
SHMT2-217ENST00000555116 SEMA6BQ9H3T3 888 aa15.75■□□□□ 0.11
SHMT2-217ENST00000555116 C1orf112Q9NSG2 853 aa15.75■□□□□ 0.11
SHMT2-217ENST00000555116 DENND3A2RUS2 1198 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 CA3P07451 260 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 MAPK7Q13164 816 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 GSE1Q14687 1217 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 SLC24A5Q71RS6 500 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 CATSPER4Q7RTX7 472 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 NPAS4Q8IUM7 802 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 DEFB123Q8N688 67 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 RAD54LQ92698 747 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 KIFAP3Q92845 792 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 ZNF576Q9H609 170 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 CHST12Q9NRB3 414 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 RCOR1Q9UKL0 485 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 CFAP45Q9UL16 551 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 INSL6Q9Y581 213 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 SSBP05455 408 aaKnown RBP eCLIP15.74■□□□□ 0.11
SHMT2-217ENST00000555116 ZSCAN20P17040 1043 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-217ENST00000555116 GUCY2CP25092 1073 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 MBTD1Q05BQ5 628 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 AXDND1Q5T1B0 1012 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-217ENST00000555116 RASSF8Q8NHQ8 419 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 SP7Q8TDD2 431 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-217ENST00000555116 KCNG4Q8TDN1 519 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 RC3H2Q9HBD1 1191 aaKnown RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms