RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 DAGLBQ8NCG7 672 aa12.39□□□□□ -0.43
SHMT2-216ENST00000554975 VN1R2Q8NFZ6 395 aa12.39□□□□□ -0.43
SHMT2-216ENST00000554975 SPPL3Q8TCT6 385 aa12.39□□□□□ -0.43
SHMT2-216ENST00000554975 PIGSQ96S52 555 aa12.39□□□□□ -0.43
SHMT2-216ENST00000554975 AMNQ9BXJ7 453 aa12.39□□□□□ -0.43
SHMT2-216ENST00000554975 GTPBP4Q9BZE4 634 aaKnown RBP12.39□□□□□ -0.43
SHMT2-216ENST00000554975 TUT1Q9H6E5 874 aaKnown RBP12.39□□□□□ -0.43
SHMT2-216ENST00000554975 SETD4Q9NVD3 440 aa12.39□□□□□ -0.43
SHMT2-216ENST00000554975 VPS54Q9P1Q0 977 aa12.39□□□□□ -0.43
SHMT2-216ENST00000554975 PYCARDQ9ULZ3 195 aa12.39□□□□□ -0.43
SHMT2-216ENST00000554975 TRPC6Q9Y210 931 aa12.39□□□□□ -0.43
SHMT2-216ENST00000554975 CEP250Q9BV73 2442 aa12.39□□□□□ -0.43
SHMT2-216ENST00000554975 LAD1O00515 517 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 ZBTB5O15062 677 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 GALR2O43603 387 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-216ENST00000554975 PLEKHA8P1O95397 391 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 CFBP00751 764 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 GHRP10912 638 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 MYCLP12524 364 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-216ENST00000554975 SMARCA1P28370 1054 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 ERCC5P28715 1186 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-216ENST00000554975 ICAM3P32942 547 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 NBL1P41271 181 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 TOB1P50616 345 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-216ENST00000554975 NLRP5P59047 1200 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 ADAM17P78536 824 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 ATP2C1P98194 919 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-216ENST00000554975 NR5A1Q13285 461 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 BTG3Q14201 252 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-216ENST00000554975 PTPN21Q16825 1174 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 ERMP1Q7Z2K6 904 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 TRIM50Q86XT4 487 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 MCF2L2Q86YR7 1114 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 LRRC8AQ8IWT6 810 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 LINC01599Q8WXQ3 324 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 SUSD6Q92537 303 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 APBB2Q92870 758 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 PDCD2LQ9BRP1 358 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 IRF2BPLQ9H1B7 796 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 RWDD3Q9Y3V2 267 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 PAXBP1Q9Y5B6 917 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 PCDHA1Q9Y5I3 950 aa12.38□□□□□ -0.43
SHMT2-216ENST00000554975 BIN1O00499 593 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 ENPP3O14638 875 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 CAND2O75155 1236 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 DGKIO75912 1065 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 ARP10275 920 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 SP100P23497 879 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-216ENST00000554975 ID4P47928 161 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 FANCCQ00597 558 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 TRAF1Q13077 416 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 LPIN1Q14693 890 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 RUFY4Q6ZNE9 571 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 FCHSD1Q86WN1 690 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 TMEM105Q8N8V8 129 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 KLHL23Q8NBE8 558 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 POF1BQ8WVV4 589 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 RIPOR3Q96MK2 946 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 ZNF830Q96NB3 372 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-216ENST00000554975 PLVAPQ9BX97 442 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 SPZ1Q9BXG8 430 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 SMOC2Q9H3U7 446 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 EHMT1Q9H9B1 1298 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 MAGEF1Q9HAY2 307 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 RMND1Q9NWS8 449 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 IFNKQ9P0W0 207 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 PCDHB6Q9Y5E3 794 aa12.37□□□□□ -0.43
SHMT2-216ENST00000554975 V9GY48 417 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-216ENST00000554975 KMT2BQ9UMN6 2715 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-216ENST00000554975 PNMA6FA0A0J9YX94 578 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 PER2O15055 1255 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 POLR2DO15514 142 aaKnown RBP12.36□□□□□ -0.43
SHMT2-216ENST00000554975 ACTN4O43707 911 aaKnown RBP12.36□□□□□ -0.43
SHMT2-216ENST00000554975 SERPINC1P01008 464 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 MYL1P05976 194 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 SLFN14P0C7P3 912 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 LONP1P36776 959 aaKnown RBP12.36□□□□□ -0.43
SHMT2-216ENST00000554975 GATMP50440 423 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 HSD17B4P51659 736 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 MGAT3Q09327 533 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 PNOCQ13519 176 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 NCAPHQ15003 741 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 PAN2Q504Q3 1202 aaKnown RBP12.36□□□□□ -0.43
SHMT2-216ENST00000554975 FRMD5Q7Z6J6 570 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 CCDC82Q8N4S0 544 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 ENOX1Q8TC92 643 aaKnown RBP12.36□□□□□ -0.43
SHMT2-216ENST00000554975 CACTINQ8WUQ7 758 aaKnown RBP12.36□□□□□ -0.43
SHMT2-216ENST00000554975 LMBR1Q8WVP7 490 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 TNFRSF25Q93038 417 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 P2RX5Q93086 422 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 RRP36Q96EU6 259 aaKnown RBP12.36□□□□□ -0.43
SHMT2-216ENST00000554975 CLIC6Q96NY7 704 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 GSDMAQ96QA5 445 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 XPO4Q9C0E2 1151 aaKnown RBP12.36□□□□□ -0.43
SHMT2-216ENST00000554975 RIOX1Q9H6W3 641 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 SEC63Q9UGP8 760 aaKnown RBP12.36□□□□□ -0.43
SHMT2-216ENST00000554975 CDH22Q9UJ99 828 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 PCDHA4Q9UN74 947 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 PCDHA5Q9Y5H7 936 aa12.36□□□□□ -0.43
SHMT2-216ENST00000554975 SPTBN2O15020 2390 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms