RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 MIER3Q7Z3K6 550 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 OR6J1Q8NGC5 347 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 DHX38Q92620 1227 aaKnown RBP16.09■□□□□ 0.17
SHMT2-208ENST00000553868 CCDC47Q96A33 483 aaKnown RBP16.09■□□□□ 0.17
SHMT2-208ENST00000553868 SENP7Q9BQF6 1050 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 EIF2AK1Q9BQI3 630 aaKnown RBP16.09■□□□□ 0.17
SHMT2-208ENST00000553868 UNC45AQ9H3U1 944 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 ANO10Q9NW15 660 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 PKD2L1Q9P0L9 805 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 INSL6Q9Y581 213 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 WDR87Q6ZQQ6 2873 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 ABHD14A-ACY1A0A1B0GW23 586 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 GOLGA6L3A6NEY3 463 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 WDR64B1ANS9 1081 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 LINC01565O15544 149 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 DHX15O43143 795 aaKnown RBP16.08■□□□□ 0.16
SHMT2-208ENST00000553868 CHMP2AO43633 222 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 CSPG5O95196 566 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 PDGFBP01127 241 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-208ENST00000553868 CXCL10P02778 98 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 SELPP16109 830 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 AFMP43652 599 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 HYAL1Q12794 435 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 ITGB3BPQ13352 177 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-208ENST00000553868 PNOCQ13519 176 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 B3GNT9Q6UX72 402 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 SV2BQ7L1I2 683 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 TRIML1Q8N9V2 468 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 AFAP1L1Q8TED9 768 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 ASIC4Q96FT7 647 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 PNMA5Q96PV4 448 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 PLIN2Q99541 437 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 GTPBP4Q9BZE4 634 aaKnown RBP16.08■□□□□ 0.16
SHMT2-208ENST00000553868 KBTBD4Q9NVX7 518 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 RMND1Q9NWS8 449 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 TUBE1Q9UJT0 475 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 DNM3Q9UQ16 869 aa16.08■□□□□ 0.16
SHMT2-208ENST00000553868 DDX39AO00148 427 aaKnown RBP16.07■□□□□ 0.16
SHMT2-208ENST00000553868 DKC1O60832 514 aaKnown RBP eCLIP16.07■□□□□ 0.16
SHMT2-208ENST00000553868 KCNA2P16389 499 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 CPT1AP50416 773 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 SMAD4Q13485 552 aaKnown RBP16.07■□□□□ 0.16
SHMT2-208ENST00000553868 NEDD9Q14511 834 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 NAALADL2Q58DX5 795 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 GDF6Q6KF10 455 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-208ENST00000553868 SEPT14Q6ZU15 432 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 CATSPER3Q86XQ3 398 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 SMAP1Q8IYB5 467 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-208ENST00000553868 LARP4BQ92615 738 aaKnown RBP16.07■□□□□ 0.16
SHMT2-208ENST00000553868 RAD54LQ92698 747 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 GSDMAQ96QA5 445 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 FUCA2Q9BTY2 467 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 IRF2BPLQ9H1B7 796 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 JPH1Q9HDC5 661 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-208ENST00000553868 VTA1Q9NP79 307 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 BMP2KQ9NSY1 1161 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-208ENST00000553868 KIAA1024Q9UPX6 916 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 SAMM50Q9Y512 469 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 PCDHA5Q9Y5H7 936 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 NLRC5Q86WI3 1866 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 MICAL3Q7RTP6 2002 aa16.07■□□□□ 0.16
SHMT2-208ENST00000553868 TPRP12270 2363 aaKnown RBP16.07■□□□□ 0.16
SHMT2-208ENST00000553868 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-208ENST00000553868 EML1O00423 815 aa16.06■□□□□ 0.16
SHMT2-208ENST00000553868 MED24O75448 989 aa16.06■□□□□ 0.16
SHMT2-208ENST00000553868 P4HBP07237 508 aaKnown RBP16.06■□□□□ 0.16
SHMT2-208ENST00000553868 HTRA4P83105 476 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-208ENST00000553868 SIGLEC14Q08ET2 396 aa16.06■□□□□ 0.16
SHMT2-208ENST00000553868 IKBKEQ14164 716 aa16.06■□□□□ 0.16
SHMT2-208ENST00000553868 NT5DC1Q5TFE4 455 aa16.06■□□□□ 0.16
SHMT2-208ENST00000553868 MYOCDQ8IZQ8 938 aa16.06■□□□□ 0.16
SHMT2-208ENST00000553868 CAGE1Q8TC20 777 aa16.06■□□□□ 0.16
SHMT2-208ENST00000553868 SP7Q8TDD2 431 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-208ENST00000553868 COPS5Q92905 334 aa16.06■□□□□ 0.16
SHMT2-208ENST00000553868 HSD17B14Q9BPX1 270 aa16.06■□□□□ 0.16
SHMT2-208ENST00000553868 NAT10Q9H0A0 1025 aaKnown RBP16.06■□□□□ 0.16
SHMT2-208ENST00000553868 IGFLR1Q9H665 355 aa16.06■□□□□ 0.16
SHMT2-208ENST00000553868 SLC9A2Q9UBY0 812 aa16.06■□□□□ 0.16
SHMT2-208ENST00000553868 ATP9AO75110 1047 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 PSAPP07602 524 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 PRR29P0C7W0 189 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 SPATA31C1P0DKV0 1188 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 CKBP12277 381 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 NLRP12P59046 1061 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 DPYDQ12882 1025 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 TMEM192Q8IY95 271 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 GRAMD1CQ8IYS0 662 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 ADSSL1Q8N142 457 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 SPATA20Q8TB22 786 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 SCFD2Q8WU76 684 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 DYDC2Q96IM9 177 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 CNTNAP3BQ96NU0 1288 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 NACC1Q96RE7 527 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 C7orf25Q9BPX7 421 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 CNTNAP3Q9BZ76 1288 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 ZSWIM4Q9H7M6 989 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 BLOC1S4Q9NUP1 217 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 DACH1Q9UI36 760 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 CD207Q9UJ71 328 aa16.05■□□□□ 0.16
SHMT2-208ENST00000553868 PCDHA10Q9Y5I2 948 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms