RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 CREBRFQ8IUR6 639 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 TRIM59Q8IWR1 403 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 GPC2Q8N158 579 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 ZNF280CQ8ND82 737 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 REPS2Q8NFH8 660 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 RDM1Q8NG50 284 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 SYTL5Q8TDW5 730 aaPredicted RBP6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 ZNF592Q92610 1267 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 KLRG1Q96E93 195 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 DYDC2Q96IM9 177 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 EIF3CQ99613 913 aaKnown RBP6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 CHP1Q99653 195 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 FEZ1Q99689 392 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 SENP7Q9BQF6 1050 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 REEP2Q9BRK0 252 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 ZNF577Q9BSK1 485 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 STRA6Q9BX79 667 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 TEKT3Q9BXF9 490 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 OXCT2Q9BYC2 517 aaPredicted RBP6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 HAUS4Q9H6D7 363 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 METTL14Q9HCE5 456 aaKnown RBP6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 TBC1D22BQ9NU19 505 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 ZNHIT6Q9NWK9 470 aaKnown RBP6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 GPRC5DQ9NZD1 345 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 RGL1Q9NZL6 768 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 COL20A1Q9P218 1284 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 DNAI1Q9UI46 699 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 ODF2LQ9ULJ1 636 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 DYRK1BQ9Y463 629 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 DOCK5Q9H7D0 1870 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 ZC3H4Q9UPT8 1303 aaKnown RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 NPHP3-ACAD11A0A0J9YXS1 232 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 SSU72P8A0A1W2PR75 194 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 ERVH48-1M5A8F1 160 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 VWA5AO00534 786 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 NKRFO15226 690 aaKnown RBP eCLIP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 FANCGO15287 622 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 CALUO43852 315 aaPredicted RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 FLOT1O75955 427 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 SSBP05455 408 aaKnown RBP eCLIP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 KRT18P05783 430 aaKnown RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 TAL1P17542 331 aaPredicted RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 TRIM21P19474 475 aaKnown RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 LMNB1P20700 586 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 RPL13P26373 211 aaKnown RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 CYLC1P35663 651 aaPredicted RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 ARHGAP25P42331 645 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 GNG11P61952 73 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 MRPS9P82933 396 aaKnown RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 NCBP1Q09161 790 aaKnown RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 SPP2Q13103 211 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 COG2Q14746 738 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 R3HDM1Q15032 1099 aaKnown RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 ZYXQ15942 572 aaKnown RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 SUPT20HL1Q3ZLR7 823 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 TBC1D10BQ4KMP7 808 aaPredicted RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 DPY19L2P1Q6NXN4 242 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 CATSPERGQ6ZRH7 1159 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 ZNF720Q7Z2F6 126 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 GLIS3Q8NEA6 775 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 WDR24Q96S15 920 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 FIZ1Q96SL8 496 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 KRTAP4-12Q9BQ66 201 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 TIPINQ9BVW5 301 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 FGFBP2Q9BYJ0 223 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 BHMT2Q9H2M3 363 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 UNC45AQ9H3U1 944 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 RPAP3Q9H6T3 665 aaPredicted RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 ZSWIM4Q9H7M6 989 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 MRPL44Q9H9J2 332 aaKnown RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 AGO4Q9HCK5 861 aaKnown RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 PLCB1Q9NQ66 1216 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 KCNH7Q9NS40 1196 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 TYW1Q9NV66 732 aaKnown RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 DMAC2Q9NW81 257 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 HOXC10Q9NYD6 342 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 CGNQ9P2M7 1197 aaKnown RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 DBR1Q9UK59 544 aaKnown RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 FBXL5Q9UKA1 691 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 ZNF215Q9UL58 517 aaPredicted RBP6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 MYO6Q9UM54 1294 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 AFG3L2Q9Y4W6 797 aa6.62□□□□□ -1.35
VIPAS39-204ENST00000553576 ASTN2O75129 1339 aaPredicted RBP6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 ZNF541Q9H0D2 1346 aa6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 GTPBP10A4D1E9 387 aaKnown RBP6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 EFCAB8A8MWE9 144 aa6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 NFIBO00712 420 aa6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 SLC16A3O15427 465 aaKnown RBP6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 TGFB1I1O43294 461 aa6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 KIF5CO60282 957 aa6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 STAM2O75886 525 aa6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 NOL4O94818 638 aa6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 ALAS1P13196 640 aa6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 SFNP31947 248 aa6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 CASP5P51878 434 aa6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 HIRAP54198 1017 aaPredicted RBP6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 SNRPFP62306 86 aaKnown RBP6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 RPS6P62753 249 aaKnown RBP6.61□□□□□ -1.35
VIPAS39-204ENST00000553576 ALCAMQ13740 583 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms