RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 RTN4RL1Q86UN2 441 aaPredicted RBP25.33■■□□□ 1.65
TDP1-206ENST00000553569 KRI1Q8N9T8 703 aaKnown RBP25.33■■□□□ 1.65
TDP1-206ENST00000553569 LINC00301Q8NCQ3 95 aa25.33■■□□□ 1.65
TDP1-206ENST00000553569 ADAM2Q99965 735 aa25.33■■□□□ 1.65
TDP1-206ENST00000553569 TSPYL2Q9H2G4 693 aaPredicted RBP25.33■■□□□ 1.65
TDP1-206ENST00000553569 IFT122Q9HBG6 1241 aa25.33■■□□□ 1.65
TDP1-206ENST00000553569 ZDHHC9Q9Y397 364 aa25.33■■□□□ 1.65
TDP1-206ENST00000553569 LAMA2P24043 3122 aaKnown RBP25.32■■□□□ 1.64
TDP1-206ENST00000553569 SPTLC2O15270 562 aa25.32■■□□□ 1.64
TDP1-206ENST00000553569 CA3P07451 260 aa25.32■■□□□ 1.64
TDP1-206ENST00000553569 SFPQP23246 707 aaKnown RBP eCLIP25.32■■□□□ 1.64
TDP1-206ENST00000553569 GLRA2P23416 452 aa25.32■■□□□ 1.64
TDP1-206ENST00000553569 CAPSQ13938 189 aa25.32■■□□□ 1.64
TDP1-206ENST00000553569 TFDP1Q14186 410 aa25.32■■□□□ 1.64
TDP1-206ENST00000553569 DEFB123Q8N688 67 aa25.32■■□□□ 1.64
TDP1-206ENST00000553569 TOP1MTQ969P6 601 aa25.32■■□□□ 1.64
TDP1-206ENST00000553569 EPSTI1Q96J88 318 aa25.32■■□□□ 1.64
TDP1-206ENST00000553569 INO80BQ9C086 356 aaPredicted RBP25.32■■□□□ 1.64
TDP1-206ENST00000553569 TTC3P53804 2025 aa25.31■■□□□ 1.64
TDP1-206ENST00000553569 SLC26A4O43511 780 aa25.31■■□□□ 1.64
TDP1-206ENST00000553569 YEATS4O95619 227 aa25.31■■□□□ 1.64
TDP1-206ENST00000553569 PHKA2P46019 1235 aa25.31■■□□□ 1.64
TDP1-206ENST00000553569 DNM1Q05193 864 aaKnown RBP25.31■■□□□ 1.64
TDP1-206ENST00000553569 USP49Q70CQ1 688 aa25.31■■□□□ 1.64
TDP1-206ENST00000553569 CATSPER4Q7RTX7 472 aa25.31■■□□□ 1.64
TDP1-206ENST00000553569 SYMPKQ92797 1274 aaKnown RBP25.31■■□□□ 1.64
TDP1-206ENST00000553569 RUSC1Q9BVN2 902 aa25.31■■□□□ 1.64
TDP1-206ENST00000553569 TTYH1Q9H313 450 aaPredicted RBP25.31■■□□□ 1.64
TDP1-206ENST00000553569 POLD4Q9HCU8 107 aa25.31■■□□□ 1.64
TDP1-206ENST00000553569 MORC2Q9Y6X9 1032 aaPredicted RBP25.31■■□□□ 1.64
TDP1-206ENST00000553569 LCHNA4D1U4 455 aa25.3■■□□□ 1.64
TDP1-206ENST00000553569 PLCG1P19174 1290 aa25.3■■□□□ 1.64
TDP1-206ENST00000553569 PPP2R2DQ66LE6 453 aa25.3■■□□□ 1.64
TDP1-206ENST00000553569 SRGAP1Q7Z6B7 1085 aa25.3■■□□□ 1.64
TDP1-206ENST00000553569 CCSER1Q9C0I3 900 aa25.3■■□□□ 1.64
TDP1-206ENST00000553569 MINDY3Q9H8M7 445 aa25.3■■□□□ 1.64
TDP1-206ENST00000553569 SLC28A3Q9HAS3 691 aa25.3■■□□□ 1.64
TDP1-206ENST00000553569 TMEM265A0A087WTH1 108 aa25.29■■□□□ 1.64
TDP1-206ENST00000553569 LRRIQ4A6NIV6 560 aa25.29■■□□□ 1.64
TDP1-206ENST00000553569 PLA2G4BP0C869 781 aa25.29■■□□□ 1.64
TDP1-206ENST00000553569 ZSCAN20P17040 1043 aaPredicted RBP25.29■■□□□ 1.64
TDP1-206ENST00000553569 TXLNAP40222 546 aa25.29■■□□□ 1.64
TDP1-206ENST00000553569 DSC3Q14574 896 aa25.29■■□□□ 1.64
TDP1-206ENST00000553569 YME1L1Q96TA2 773 aa25.29■■□□□ 1.64
TDP1-206ENST00000553569 RAD9AQ99638 391 aa25.29■■□□□ 1.64
TDP1-206ENST00000553569 ZNF576Q9H609 170 aa25.29■■□□□ 1.64
TDP1-206ENST00000553569 RGS18Q9NS28 235 aa25.29■■□□□ 1.64
TDP1-206ENST00000553569 C1orf112Q9NSG2 853 aa25.29■■□□□ 1.64
TDP1-206ENST00000553569 ARHGEF15O94989 841 aa25.28■■□□□ 1.64
TDP1-206ENST00000553569 SARSP49591 514 aaKnown RBP25.28■■□□□ 1.64
TDP1-206ENST00000553569 PTENP60484 403 aa25.28■■□□□ 1.64
TDP1-206ENST00000553569 RINT1Q6NUQ1 792 aa25.28■■□□□ 1.64
TDP1-206ENST00000553569 KCTD17Q8N5Z5 321 aa25.28■■□□□ 1.64
TDP1-206ENST00000553569 LRRC15Q8TF66 581 aa25.28■■□□□ 1.64
TDP1-206ENST00000553569 BSNDQ8WZ55 320 aa25.28■■□□□ 1.64
TDP1-206ENST00000553569 SEMA6BQ9H3T3 888 aa25.28■■□□□ 1.64
TDP1-206ENST00000553569 LRFN2Q9ULH4 789 aa25.28■■□□□ 1.64
TDP1-206ENST00000553569 PIN4Q9Y237 131 aaKnown RBP25.28■■□□□ 1.64
TDP1-206ENST00000553569 INO80B-WBP1J3KQ70 363 aa25.27■■□□□ 1.64
TDP1-206ENST00000553569 HIP1RO75146 1068 aa25.27■■□□□ 1.64
TDP1-206ENST00000553569 PPP6R2O75170 966 aa25.27■■□□□ 1.64
TDP1-206ENST00000553569 NCLP19338 710 aaKnown RBP25.27■■□□□ 1.64
TDP1-206ENST00000553569 SLC12A3P55017 1021 aa25.27■■□□□ 1.64
TDP1-206ENST00000553569 RAD51AP2Q09MP3 1159 aa25.27■■□□□ 1.64
TDP1-206ENST00000553569 DHX8Q14562 1220 aaKnown RBP25.27■■□□□ 1.64
TDP1-206ENST00000553569 ATL3Q6DD88 541 aa25.27■■□□□ 1.64
TDP1-206ENST00000553569 SLC24A5Q71RS6 500 aa25.27■■□□□ 1.64
TDP1-206ENST00000553569 NPAS4Q8IUM7 802 aa25.27■■□□□ 1.64
TDP1-206ENST00000553569 SYT2Q8N9I0 419 aaPredicted RBP25.27■■□□□ 1.64
TDP1-206ENST00000553569 CHAMP1Q96JM3 812 aa25.27■■□□□ 1.64
TDP1-206ENST00000553569 CCDC39Q9UFE4 941 aa25.27■■□□□ 1.64
TDP1-206ENST00000553569 CFAP45Q9UL16 551 aa25.27■■□□□ 1.64
TDP1-206ENST00000553569 INSL6Q9Y581 213 aa25.27■■□□□ 1.64
TDP1-206ENST00000553569 C9IYK1 514 aa25.26■■□□□ 1.63
TDP1-206ENST00000553569 ERLIN2O94905 339 aa25.26■■□□□ 1.63
TDP1-206ENST00000553569 STAG3L1P0CL83 205 aa25.26■■□□□ 1.63
TDP1-206ENST00000553569 HTRA4P83105 476 aaPredicted RBP25.26■■□□□ 1.63
TDP1-206ENST00000553569 C1orf186Q6ZWK4 172 aa25.26■■□□□ 1.63
TDP1-206ENST00000553569 KCNG4Q8TDN1 519 aa25.26■■□□□ 1.63
TDP1-206ENST00000553569 RAD54LQ92698 747 aa25.26■■□□□ 1.63
TDP1-206ENST00000553569 KIFAP3Q92845 792 aa25.26■■□□□ 1.63
TDP1-206ENST00000553569 BLOC1S4Q9NUP1 217 aa25.26■■□□□ 1.63
TDP1-206ENST00000553569 MBTD1Q05BQ5 628 aa25.25■■□□□ 1.63
TDP1-206ENST00000553569 POU5F1BQ06416 359 aa25.25■■□□□ 1.63
TDP1-206ENST00000553569 MCM6Q14566 821 aa25.25■■□□□ 1.63
TDP1-206ENST00000553569 TWF2Q6IBS0 349 aaKnown RBP25.25■■□□□ 1.63
TDP1-206ENST00000553569 FAM43BQ6ZT52 329 aaPredicted RBP25.25■■□□□ 1.63
TDP1-206ENST00000553569 IFT74Q96LB3 600 aa25.25■■□□□ 1.63
TDP1-206ENST00000553569 AGPAT5Q9NUQ2 364 aa25.25■■□□□ 1.63
TDP1-206ENST00000553569 PCDHB7Q9Y5E2 793 aa25.25■■□□□ 1.63
TDP1-206ENST00000553569 SZT2Q5T011 3432 aa25.25■■□□□ 1.63
TDP1-206ENST00000553569 MYH11P35749 1972 aa25.24■■□□□ 1.63
TDP1-206ENST00000553569 CUTAO60888 179 aa25.24■■□□□ 1.63
TDP1-206ENST00000553569 TAP1Q03518 808 aa25.24■■□□□ 1.63
TDP1-206ENST00000553569 PPP2R5AQ15172 486 aa25.24■■□□□ 1.63
TDP1-206ENST00000553569 SPRED2Q7Z698 418 aa25.24■■□□□ 1.63
TDP1-206ENST00000553569 GPBP1Q86WP2 473 aa25.24■■□□□ 1.63
TDP1-206ENST00000553569 IFNLR1Q8IU57 520 aaPredicted RBP25.24■■□□□ 1.63
TDP1-206ENST00000553569 ZBTB8OSQ8IWT0 167 aa25.24■■□□□ 1.63
TDP1-206ENST00000553569 DEPTORQ8TB45 409 aa25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms