RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 BMP2KQ9NSY1 1161 aaPredicted RBP21.5■■□□□ 1.03
PTCH1-227ENST00000553256 MRPL42Q9Y6G3 142 aaKnown RBP21.5■■□□□ 1.03
PTCH1-227ENST00000553256 RALGAPA2Q2PPJ7 1873 aa21.49■■□□□ 1.03
PTCH1-227ENST00000553256 A0A0U1RQF3 1178 aa21.49■■□□□ 1.03
PTCH1-227ENST00000553256 DENND3A2RUS2 1198 aa21.49■■□□□ 1.03
PTCH1-227ENST00000553256 STAG3L1P0CL83 205 aa21.49■■□□□ 1.03
PTCH1-227ENST00000553256 HOXA11P31270 313 aaPredicted RBP21.49■■□□□ 1.03
PTCH1-227ENST00000553256 POU5F1BQ06416 359 aa21.49■■□□□ 1.03
PTCH1-227ENST00000553256 ECHDC2Q86YB7 292 aa21.49■■□□□ 1.03
PTCH1-227ENST00000553256 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.49■■□□□ 1.03
PTCH1-227ENST00000553256 FBXO22Q8NEZ5 403 aa21.49■■□□□ 1.03
PTCH1-227ENST00000553256 MTRQ99707 1265 aa21.49■■□□□ 1.03
PTCH1-227ENST00000553256 CHST12Q9NRB3 414 aa21.49■■□□□ 1.03
PTCH1-227ENST00000553256 MUC3AQ02505 3323 aa21.49■■□□□ 1.03
PTCH1-227ENST00000553256 FNDC1Q4ZHG4 1894 aaPredicted RBP21.48■■□□□ 1.03
PTCH1-227ENST00000553256 ASAP2O43150 1006 aa21.48■■□□□ 1.03
PTCH1-227ENST00000553256 GLRA2P23416 452 aa21.48■■□□□ 1.03
PTCH1-227ENST00000553256 CAMK1Q14012 370 aa21.48■■□□□ 1.03
PTCH1-227ENST00000553256 BTG3Q14201 252 aaPredicted RBP21.48■■□□□ 1.03
PTCH1-227ENST00000553256 MCTP1Q6DN14 999 aa21.48■■□□□ 1.03
PTCH1-227ENST00000553256 SLC17A8Q8NDX2 589 aa21.48■■□□□ 1.03
PTCH1-227ENST00000553256 TCP11Q8WWU5 503 aa21.48■■□□□ 1.03
PTCH1-227ENST00000553256 NLRP4Q96MN2 994 aa21.48■■□□□ 1.03
PTCH1-227ENST00000553256 NACC1Q96RE7 527 aa21.48■■□□□ 1.03
PTCH1-227ENST00000553256 ATP6V0A4Q9HBG4 840 aa21.48■■□□□ 1.03
PTCH1-227ENST00000553256 NLRC5Q86WI3 1866 aa21.47■■□□□ 1.03
PTCH1-227ENST00000553256 PP2D1A8MPX8 630 aa21.47■■□□□ 1.03
PTCH1-227ENST00000553256 H3BQV1 296 aa21.47■■□□□ 1.03
PTCH1-227ENST00000553256 K7ELQ4 463 aaPredicted RBP21.47■■□□□ 1.03
PTCH1-227ENST00000553256 RB1P06400 928 aa21.47■■□□□ 1.03
PTCH1-227ENST00000553256 PTENP60484 403 aa21.47■■□□□ 1.03
PTCH1-227ENST00000553256 CAPSQ13938 189 aa21.47■■□□□ 1.03
PTCH1-227ENST00000553256 AMHR2Q16671 573 aa21.47■■□□□ 1.03
PTCH1-227ENST00000553256 SRGAP1Q7Z6B7 1085 aa21.47■■□□□ 1.03
PTCH1-227ENST00000553256 CASD1Q96PB1 797 aa21.47■■□□□ 1.03
PTCH1-227ENST00000553256 NFKBIZQ9BYH8 718 aa21.47■■□□□ 1.03
PTCH1-227ENST00000553256 INO80BQ9C086 356 aaPredicted RBP21.47■■□□□ 1.03
PTCH1-227ENST00000553256 AGPAT5Q9NUQ2 364 aa21.47■■□□□ 1.03
PTCH1-227ENST00000553256 LRWD1Q9UFC0 647 aa21.47■■□□□ 1.03
PTCH1-227ENST00000553256 PCDHB7Q9Y5E2 793 aa21.47■■□□□ 1.03
PTCH1-227ENST00000553256 KIAA1671Q9BY89 1806 aa21.46■■□□□ 1.03
PTCH1-227ENST00000553256 FGFR1P11362 822 aa21.46■■□□□ 1.03
PTCH1-227ENST00000553256 SYT1P21579 422 aa21.46■■□□□ 1.03
PTCH1-227ENST00000553256 SFPQP23246 707 aaKnown RBP eCLIP21.46■■□□□ 1.03
PTCH1-227ENST00000553256 CLLU1OSQ5K130 101 aa21.46■■□□□ 1.03
PTCH1-227ENST00000553256 UBXN11Q5T124 520 aa21.46■■□□□ 1.03
PTCH1-227ENST00000553256 LRRC55Q6ZSA7 311 aa21.46■■□□□ 1.03
PTCH1-227ENST00000553256 RNF149Q8NC42 400 aa21.46■■□□□ 1.03
PTCH1-227ENST00000553256 CWH43Q9H720 699 aa21.46■■□□□ 1.03
PTCH1-227ENST00000553256 GPRC5CQ9NQ84 441 aa21.46■■□□□ 1.03
PTCH1-227ENST00000553256 HCSTQ9UBK5 93 aa21.46■■□□□ 1.03
PTCH1-227ENST00000553256 BRWD1Q9NSI6 2320 aa21.45■■□□□ 1.02
PTCH1-227ENST00000553256 TTC28Q96AY4 2481 aa21.45■■□□□ 1.02
PTCH1-227ENST00000553256 CUL9Q8IWT3 2517 aa21.45■■□□□ 1.02
PTCH1-227ENST00000553256 ZNF623O75123 536 aa21.45■■□□□ 1.02
PTCH1-227ENST00000553256 SRGAP2CP0DJJ0 459 aa21.45■■□□□ 1.02
PTCH1-227ENST00000553256 CDC25AP30304 524 aa21.45■■□□□ 1.02
PTCH1-227ENST00000553256 PHKA2P46019 1235 aa21.45■■□□□ 1.02
PTCH1-227ENST00000553256 MXD4Q14582 209 aaPredicted RBP21.45■■□□□ 1.02
PTCH1-227ENST00000553256 COL19A1Q14993 1142 aa21.45■■□□□ 1.02
PTCH1-227ENST00000553256 CCDC85BQ15834 202 aaPredicted RBP21.45■■□□□ 1.02
PTCH1-227ENST00000553256 HYIQ5T013 277 aa21.45■■□□□ 1.02
PTCH1-227ENST00000553256 ARL6IP4Q66PJ3 421 aaKnown RBP21.45■■□□□ 1.02
PTCH1-227ENST00000553256 HAUS3Q68CZ6 603 aa21.45■■□□□ 1.02
PTCH1-227ENST00000553256 BRAPQ7Z569 592 aa21.45■■□□□ 1.02
PTCH1-227ENST00000553256 ERMNQ8TAM6 284 aa21.45■■□□□ 1.02
PTCH1-227ENST00000553256 MRPL38Q96DV4 380 aaKnown RBP21.45■■□□□ 1.02
PTCH1-227ENST00000553256 PLVAPQ9BX97 442 aa21.45■■□□□ 1.02
PTCH1-227ENST00000553256 RWDD3Q9Y3V2 267 aa21.45■■□□□ 1.02
PTCH1-227ENST00000553256 GRM6O15303 877 aa21.44■■□□□ 1.02
PTCH1-227ENST00000553256 GTPBP6O43824 516 aaPredicted RBP21.44■■□□□ 1.02
PTCH1-227ENST00000553256 USO1O60763 962 aaKnown RBP21.44■■□□□ 1.02
PTCH1-227ENST00000553256 EOMESO95936 686 aa21.44■■□□□ 1.02
PTCH1-227ENST00000553256 ZSCAN20P17040 1043 aaPredicted RBP21.44■■□□□ 1.02
PTCH1-227ENST00000553256 CYP11B2P19099 503 aa21.44■■□□□ 1.02
PTCH1-227ENST00000553256 MBTD1Q05BQ5 628 aa21.44■■□□□ 1.02
PTCH1-227ENST00000553256 RESTQ13127 1097 aa21.44■■□□□ 1.02
PTCH1-227ENST00000553256 GPM6BQ13491 265 aa21.44■■□□□ 1.02
PTCH1-227ENST00000553256 PAN2Q504Q3 1202 aaKnown RBP21.44■■□□□ 1.02
PTCH1-227ENST00000553256 DTHD1Q6ZMT9 781 aa21.44■■□□□ 1.02
PTCH1-227ENST00000553256 KCNK18Q7Z418 384 aa21.44■■□□□ 1.02
PTCH1-227ENST00000553256 BSNDQ8WZ55 320 aa21.44■■□□□ 1.02
PTCH1-227ENST00000553256 P2RX5Q93086 422 aa21.44■■□□□ 1.02
PTCH1-227ENST00000553256 SCLT1Q96NL6 688 aa21.44■■□□□ 1.02
PTCH1-227ENST00000553256 TMEM117Q9H0C3 514 aa21.44■■□□□ 1.02
PTCH1-227ENST00000553256 MTMR6Q9Y217 621 aa21.44■■□□□ 1.02
PTCH1-227ENST00000553256 ATG2AQ2TAZ0 1938 aa21.44■■□□□ 1.02
PTCH1-227ENST00000553256 MYO7AQ13402 2215 aa21.44■■□□□ 1.02
PTCH1-227ENST00000553256 MEIS3P2A8K0S8 358 aa21.43■■□□□ 1.02
PTCH1-227ENST00000553256 DNAJB1P25685 340 aa21.43■■□□□ 1.02
PTCH1-227ENST00000553256 CTNNB1P35222 781 aa21.43■■□□□ 1.02
PTCH1-227ENST00000553256 CCT6AP40227 531 aaKnown RBP21.43■■□□□ 1.02
PTCH1-227ENST00000553256 CDCA2Q69YH5 1023 aaPredicted RBP21.43■■□□□ 1.02
PTCH1-227ENST00000553256 PADI6Q6TGC4 694 aa21.43■■□□□ 1.02
PTCH1-227ENST00000553256 PPM1EQ8WY54 764 aa21.43■■□□□ 1.02
PTCH1-227ENST00000553256 PNMA5Q96PV4 448 aa21.43■■□□□ 1.02
PTCH1-227ENST00000553256 POLR3FQ9H1D9 316 aaPredicted RBP21.43■■□□□ 1.02
PTCH1-227ENST00000553256 TYW1Q9NV66 732 aaKnown RBP21.43■■□□□ 1.02
PTCH1-227ENST00000553256 RNF216Q9NWF9 866 aaPredicted RBP21.43■■□□□ 1.02
PTCH1-227ENST00000553256 DACT1Q9NYF0 836 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms