RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 NAIF1Q69YI7 327 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-216ENST00000552909 TTC19Q6DKK2 380 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-216ENST00000552909 PPP1R18Q6NYC8 613 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 CCNI2Q6ZMN8 369 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-216ENST00000552909 TRAPPC11Q7Z392 1133 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 SH3RF1Q7Z6J0 888 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 TMTC1Q8IUR5 882 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 ZNF713Q8N859 430 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-216ENST00000552909 GLT1D1Q96MS3 346 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 ANO3Q9BYT9 981 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 MAN1B1Q9UKM7 699 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 SPATA31C2B4DYI2 1134 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 RBAK-RBAKDNI3L0D1 243 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 NKRFO15226 690 aaKnown RBP eCLIP8.38□□□□□ -1.07
LIMA1-216ENST00000552909 PQBP1O60828 265 aaKnown RBP8.38□□□□□ -1.07
LIMA1-216ENST00000552909 GGPS1O95749 300 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 UBA1P22314 1058 aaKnown RBP8.38□□□□□ -1.07
LIMA1-216ENST00000552909 TOB1P50616 345 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-216ENST00000552909 PURAQ00577 322 aaKnown RBP8.38□□□□□ -1.07
LIMA1-216ENST00000552909 ACTN3Q08043 901 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-216ENST00000552909 EARS2Q5JPH6 523 aaKnown RBP8.38□□□□□ -1.07
LIMA1-216ENST00000552909 CCDC70Q6NSX1 233 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 CCDC50Q8IVM0 306 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 GSPT2Q8IYD1 628 aaKnown RBP8.38□□□□□ -1.07
LIMA1-216ENST00000552909 BLIDQ8IZY5 108 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 CENPHQ9H3R5 247 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 SAMSN1Q9NSI8 373 aaKnown RBP8.38□□□□□ -1.07
LIMA1-216ENST00000552909 PCDHA4Q9UN74 947 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 NR2E3Q9Y5X4 410 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 ESYT2A0FGR8 921 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 FAM205CA6NFA0 338 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 TEX33O43247 280 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 EDIL3O43854 480 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 ZMYND10O75800 440 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 RASSF9O75901 435 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 ABL1P00519 1130 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 GH1P01241 217 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 MMP3P08254 477 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 MYL3P08590 195 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 TGFB3P10600 412 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 EZRP15311 586 aaKnown RBP8.37□□□□□ -1.07
LIMA1-216ENST00000552909 FECHP22830 423 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 ITGB8P26012 769 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 CASP14P31944 242 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 CPT1AP50416 773 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 CDK7P50613 346 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 CLNS1AP54105 237 aaKnown RBP8.37□□□□□ -1.07
LIMA1-216ENST00000552909 ZKSCAN8Q15776 578 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-216ENST00000552909 SNCBQ16143 134 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 CELF3Q5SZQ8 465 aaKnown RBP8.37□□□□□ -1.07
LIMA1-216ENST00000552909 RNF187Q5TA31 235 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-216ENST00000552909 C1orf53Q5VUE5 145 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 CYFIP1Q7L576 1253 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 ELOA2Q8IYF1 753 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-216ENST00000552909 UIMC1Q96RL1 719 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 RUFY1Q96T51 708 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 MMS19Q96T76 1030 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 C6orf50Q9HD87 102 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 KCNH3Q9ULD8 1083 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 SAR1BQ9Y6B6 198 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 EYSQ5T1H1 3165 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 TRIM43BA6NCK2 446 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 ARVCFO00192 962 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 ZEB2O60315 1214 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 MYBL2P10244 700 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 EPB41P11171 864 aaKnown RBP8.37□□□□□ -1.07
LIMA1-216ENST00000552909 ICAM3P32942 547 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 NAP1L1P55209 391 aaKnown RBP8.37□□□□□ -1.07
LIMA1-216ENST00000552909 FAAP100Q0VG06 881 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 PDCLQ13371 301 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 ITGA7Q13683 1181 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 POSTNQ15063 836 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 FILIP1LQ4L180 1135 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 RILPL1Q5EBL4 403 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 CYP26C1Q6V0L0 522 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 PIK3AP1Q6ZUJ8 805 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 CEP57Q86XR8 500 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 CCDC13Q8IYE1 715 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 REXO1Q8N1G1 1221 aaKnown RBP8.37□□□□□ -1.07
LIMA1-216ENST00000552909 TRIML1Q8N9V2 468 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 CAGE1Q8TC20 777 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 AENQ8WTP8 325 aaKnown RBP8.37□□□□□ -1.07
LIMA1-216ENST00000552909 CRYGNQ8WXF5 182 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 TRIM43Q96BQ3 446 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-216ENST00000552909 CTAGE1Q96RT6 745 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 PKD2L1Q9P0L9 805 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 UBIAD1Q9Y5Z9 338 aa8.37□□□□□ -1.07
LIMA1-216ENST00000552909 SCN10AQ9Y5Y9 1956 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 GOLGA6L7A0A1B0GV03 622 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 KLHL33A6NCF5 533 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 FAM86B1E9PN63 330 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 M0R2N6 131 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 RTN2O75298 545 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 STAM2O75886 525 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 FOSP01100 380 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-216ENST00000552909 FAM86B2P0C5J1 330 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 ARP10275 920 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 IBSPP21815 317 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-216ENST00000552909 ERCC5P28715 1186 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-216ENST00000552909 GNA11P29992 359 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms