RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 MYZAPP0CAP1 466 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 NPR1P16066 1061 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 INPP5BP32019 993 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 MARCKSL1P49006 195 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 POU5F1Q01860 360 aaKnown RBP8.14□□□□□ -1.11
LIMA1-213ENST00000552720 DHX9Q08211 1270 aaKnown RBP8.14□□□□□ -1.11
LIMA1-213ENST00000552720 CUL1Q13616 776 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 ZYXQ15942 572 aaKnown RBP8.14□□□□□ -1.11
LIMA1-213ENST00000552720 QPCTQ16769 361 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 MSL1Q68DK7 614 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 ZNF720Q7Z2F6 126 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 TRMT1LQ7Z2T5 733 aaKnown RBP8.14□□□□□ -1.11
LIMA1-213ENST00000552720 FAM178BQ8IXR5 827 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 ATP8B4Q8TF62 1192 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 ALG3Q92685 438 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 GLG1Q92896 1179 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 HOOK2Q96ED9 719 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 IDI2Q9BXS1 227 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 PCIF1Q9H4Z3 704 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 PARVGQ9HBI0 331 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 AGPAT3Q9NRZ7 376 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 LOXHD1Q8IVV2 1947 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 A0A0A6YYK5 440 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-213ENST00000552720 GTPBP10A4D1E9 387 aaKnown RBP8.13□□□□□ -1.11
LIMA1-213ENST00000552720 CCDC188H7C350 402 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 FOXN3O00409 490 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-213ENST00000552720 ECE2O60344 883 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 CYP3A4P08684 503 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 PPATQ06203 517 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 ODR4Q5SWX8 454 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 EMC10Q5UCC4 262 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 ZNF746Q6NUN9 644 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-213ENST00000552720 KCNV1Q6PIU1 500 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 TMC3Q7Z5M5 1100 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 COL23A1Q86Y22 540 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-213ENST00000552720 CPNE8Q86YQ8 564 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 ELMO3Q96BJ8 720 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 PRMT6Q96LA8 375 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-213ENST00000552720 CSRNP1Q96S65 589 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 STK33Q9BYT3 514 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 INTS2Q9H0H0 1204 aaKnown RBP8.13□□□□□ -1.11
LIMA1-213ENST00000552720 UNC45AQ9H3U1 944 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 GPBP1L1Q9HC44 474 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-213ENST00000552720 ACP6Q9NPH0 428 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 SLC12A6Q9UHW9 1150 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 NOVA2Q9UNW9 492 aaKnown RBP8.13□□□□□ -1.11
LIMA1-213ENST00000552720 ATP8A1Q9Y2Q0 1164 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 CAPN7Q9Y6W3 813 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 WDR81Q562E7 1941 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 AFF2P51816 1311 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 FRMPD4Q14CM0 1322 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 GOLGA6L10A6NI86 522 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 EIF3DO15371 548 aaKnown RBP eCLIP8.13□□□□□ -1.11
LIMA1-213ENST00000552720 GAS7O60861 476 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 GAP43P17677 238 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 SPRED3Q2MJR0 410 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 RBM26Q5T8P6 1007 aaKnown RBP8.13□□□□□ -1.11
LIMA1-213ENST00000552720 PODNQ7Z5L7 613 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 CDAN1Q8IWY9 1227 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 SYCE1Q8N0S2 351 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 DAW1Q8N136 415 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 LMBR1Q8WVP7 490 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 CTNNBL1Q8WYA6 563 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-213ENST00000552720 RFFLQ8WZ73 363 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 KRT35Q92764 455 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 KAT5Q92993 513 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 LRRC45Q96CN5 670 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 APEX2Q9UBZ4 518 aa8.13□□□□□ -1.11
LIMA1-213ENST00000552720 NCANO14594 1321 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 TMEM150BA6NC51 233 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 TMEM110-MUSTN1A8MSY1 372 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 MEFVO15553 781 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-213ENST00000552720 ATMINO43313 823 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-213ENST00000552720 EXOC3O60645 756 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 SHBGP04278 402 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 MMP10P09238 476 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 TMEM253P0C7T8 217 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 TNFAIP3P21580 790 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 PRELPP51888 382 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 STAT2P52630 851 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 MAGOHP61326 146 aaKnown RBP8.12□□□□□ -1.11
LIMA1-213ENST00000552720 MYL7Q01449 175 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 SF3A3Q12874 501 aaKnown RBP eCLIP8.12□□□□□ -1.11
LIMA1-213ENST00000552720 IFT88Q13099 833 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 LLGL1Q15334 1064 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 KRT71Q3SY84 523 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 ODF2Q5BJF6 829 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 RNF187Q5TA31 235 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-213ENST00000552720 MEX3CQ5U5Q3 659 aaKnown RBP8.12□□□□□ -1.11
LIMA1-213ENST00000552720 BTNL9Q6UXG8 535 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 LRIG3Q6UXM1 1119 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 ARHGEF19Q8IW93 802 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 ZDHHC14Q8IZN3 488 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 MDM1Q8TC05 714 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 SLC5A5Q92911 643 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 MAGOHBQ96A72 148 aaKnown RBP8.12□□□□□ -1.11
LIMA1-213ENST00000552720 EFCC1Q9HA90 598 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 TUFT1Q9NNX1 390 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 FBXO28Q9NVF7 368 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 PCNTO95613 3336 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms