RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 FAM13AO94988 1023 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 KIF20AO95235 890 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 CD4P01730 458 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 IDEP14735 1019 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 ERCC5P28715 1186 aaPredicted RBP10.58□□□□□ -0.72
LIMA1-211ENST00000552338 NPTX2P47972 431 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 SMTNP53814 917 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 MCCD1P59942 119 aaPredicted RBP10.58□□□□□ -0.72
LIMA1-211ENST00000552338 SNRPFP62306 86 aaKnown RBP10.58□□□□□ -0.72
LIMA1-211ENST00000552338 TYRO3Q06418 890 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 PTK7Q13308 1070 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 DRP2Q13474 957 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 NFIL3Q16649 462 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 FAM187BQ17R55 369 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 FAM26DQ5JW98 314 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 CENPPQ6IPU0 288 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 GDF6Q6KF10 455 aaPredicted RBP10.58□□□□□ -0.72
LIMA1-211ENST00000552338 SFR1Q86XK3 245 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 ADSSL1Q8N142 457 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 TMEM161BQ8NDZ6 487 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 TRAPPC12Q8WVT3 735 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 BSNDQ8WZ55 320 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 ERCC4Q92889 916 aaPredicted RBP10.58□□□□□ -0.72
LIMA1-211ENST00000552338 GPRC5CQ9NQ84 441 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 SQORQ9Y6N5 450 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 MROH7Q68CQ1 1323 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 SFI1A8K8P3 1242 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 GPR32O75388 356 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 PIGRP01833 764 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 TFRCP02786 760 aaKnown RBP10.57□□□□□ -0.72
LIMA1-211ENST00000552338 KRT18P05783 430 aaKnown RBP10.57□□□□□ -0.72
LIMA1-211ENST00000552338 PRCPP42785 496 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 PTENP60484 403 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 LAMTOR4Q0VGL1 99 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 DMP1Q13316 513 aaPredicted RBP10.57□□□□□ -0.72
LIMA1-211ENST00000552338 CAPSQ13938 189 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 STX1AQ16623 288 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 TRIM71Q2Q1W2 868 aaKnown RBP10.57□□□□□ -0.72
LIMA1-211ENST00000552338 ODR4Q5SWX8 454 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 FAM102BQ5T8I3 360 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 SLC39A5Q6ZMH5 540 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 STXBP4Q6ZWJ1 553 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 FAM178BQ8IXR5 827 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 FAM126BQ8IXS8 530 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 MYCT1Q8N699 235 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 ASAP3Q8TDY4 903 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 SCFD1Q8WVM8 642 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 PRPF31Q8WWY3 499 aaKnown RBP10.57□□□□□ -0.72
LIMA1-211ENST00000552338 TMEM143Q96AN5 459 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 DHTKD1Q96HY7 919 aaPredicted RBP10.57□□□□□ -0.72
LIMA1-211ENST00000552338 IFT74Q96LB3 600 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 TMEM106CQ9BVX2 250 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 POLR3FQ9H1D9 316 aaPredicted RBP10.57□□□□□ -0.72
LIMA1-211ENST00000552338 C2orf40Q9H1Z8 148 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 ADAMTS10Q9H324 1103 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 KCTD10Q9H3F6 313 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 FZD8Q9H461 694 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 IFT122Q9HBG6 1241 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 CGNQ9P2M7 1197 aaKnown RBP10.57□□□□□ -0.72
LIMA1-211ENST00000552338 SUCLA2Q9P2R7 463 aaPredicted RBP10.57□□□□□ -0.72
LIMA1-211ENST00000552338 DACH1Q9UI36 760 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 TRAF3IP3Q9Y228 551 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 PCDHB13Q9Y5F0 798 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 ADGRA3Q8IWK6 1321 aa10.57□□□□□ -0.72
LIMA1-211ENST00000552338 CYP2C9P11712 490 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 CD44P16070 742 aaKnown RBP10.56□□□□□ -0.72
LIMA1-211ENST00000552338 HOXD13P35453 343 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 GPC3P51654 580 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 CLCN3P51790 818 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 EFNA5P52803 228 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 PEX3P56589 373 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 MGAT3Q09327 533 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 TFDP1Q14186 410 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 MYBPC2Q14324 1141 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 DPCR1Q3MIW9 517 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 ZCWPW2Q504Y3 356 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 L1TD1Q5T7N2 865 aaKnown RBP10.56□□□□□ -0.72
LIMA1-211ENST00000552338 TRMT1LQ7Z2T5 733 aaKnown RBP10.56□□□□□ -0.72
LIMA1-211ENST00000552338 HAUS6Q7Z4H7 955 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 SRGAP1Q7Z6B7 1085 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 C12orf56Q8IXR9 622 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 ZC3H3Q8IXZ2 948 aaKnown RBP10.56□□□□□ -0.72
LIMA1-211ENST00000552338 LRRC71Q8N4P6 559 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 ENOX1Q8TC92 643 aaKnown RBP10.56□□□□□ -0.72
LIMA1-211ENST00000552338 PRIMPOLQ96LW4 560 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 MAP7D2Q96T17 732 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 CCDC113Q9H0I3 377 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 TMEM206Q9H813 350 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 GDAQ9Y2T3 454 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 STYXL1Q9Y6J8 313 aa10.56□□□□□ -0.72
LIMA1-211ENST00000552338 PDXKO00764 312 aa10.55□□□□□ -0.72
LIMA1-211ENST00000552338 IKBKBO14920 756 aa10.55□□□□□ -0.72
LIMA1-211ENST00000552338 CCNE1P24864 410 aa10.55□□□□□ -0.72
LIMA1-211ENST00000552338 CASP5P51878 434 aa10.55□□□□□ -0.72
LIMA1-211ENST00000552338 CRYBB1P53674 252 aaPredicted RBP10.55□□□□□ -0.72
LIMA1-211ENST00000552338 SOX10P56693 466 aa10.55□□□□□ -0.72
LIMA1-211ENST00000552338 IGBP1P78318 339 aa10.55□□□□□ -0.72
LIMA1-211ENST00000552338 ZNF200P98182 395 aaPredicted RBP10.55□□□□□ -0.72
LIMA1-211ENST00000552338 RAD51AP2Q09MP3 1159 aa10.55□□□□□ -0.72
LIMA1-211ENST00000552338 IQCB1Q15051 598 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms