RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 SYT3Q9BQG1 590 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 NYXQ9GZU5 481 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 CNOT7Q9UIV1 285 aaKnown RBP4.7□□□□□ -1.66
LIMA1-206ENST00000550611 STXBP5LQ9Y2K9 1186 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 DIS3Q9Y2L1 958 aaKnown RBP4.7□□□□□ -1.66
LIMA1-206ENST00000550611 RIC1Q4ADV7 1423 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 UBN2Q6ZU65 1347 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 IBTKQ9P2D0 1353 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-206ENST00000550611 U2SURPO15042 1029 aaKnown RBP4.69□□□□□ -1.66
LIMA1-206ENST00000550611 ZNF623O75123 536 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 NTSR2O95665 410 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 ITGA4P13612 1032 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 PRKAR2BP31323 418 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 MCM4P33991 863 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 PPP2CBP62714 309 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 PPP2CAP67775 309 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 APOBRQ0VD83 1088 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 DCTN1Q14203 1278 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 TAF7Q15545 349 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-206ENST00000550611 CC2D1BQ5T0F9 858 aaKnown RBP4.69□□□□□ -1.66
LIMA1-206ENST00000550611 PRAMEF18Q5VWM3 479 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 TDRD10Q5VZ19 366 aaKnown RBP4.69□□□□□ -1.66
LIMA1-206ENST00000550611 SLFN13Q68D06 897 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 MCM10Q7L590 875 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 KRT26Q7Z3Y9 468 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 LRP10Q7Z4F1 713 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 PPFIBP1Q86W92 1011 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 DCP2Q8IU60 420 aaKnown RBP4.69□□□□□ -1.66
LIMA1-206ENST00000550611 NIM1KQ8IY84 436 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 RBM17Q96I25 401 aaKnown RBP4.69□□□□□ -1.66
LIMA1-206ENST00000550611 NOL6Q9H6R4 1146 aaKnown RBP4.69□□□□□ -1.66
LIMA1-206ENST00000550611 GULP1Q9UBP9 304 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 ZNRF3Q9ULT6 936 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 PTPN22Q9Y2R2 807 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 ATP6V0A2Q9Y487 856 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 MAP3K15Q6ZN16 1313 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 CDHR2Q9BYE9 1310 aa4.69□□□□□ -1.66
LIMA1-206ENST00000550611 YDJCA8MPS7 323 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 AURKAO14965 403 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 PPIP5K2O43314 1243 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 BBOX1O75936 387 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 TM4SF4P48230 202 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 EIF4A1P60842 406 aaKnown RBP4.68□□□□□ -1.66
LIMA1-206ENST00000550611 SLC4A8Q2Y0W8 1093 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 CD300LDQ6UXZ3 194 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 SLITRK4Q8IW52 837 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 FAM26EQ8N5C1 309 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 AMER2Q8N7J2 671 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 CD99L2Q8TCZ2 262 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 USP33Q8TEY7 942 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 DPF2Q92785 391 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 RPGRQ92834 1020 aaKnown RBP4.68□□□□□ -1.66
LIMA1-206ENST00000550611 ARMC5Q96C12 935 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 SNX27Q96L92 541 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 YTHDC1Q96MU7 727 aaKnown RBP4.68□□□□□ -1.66
LIMA1-206ENST00000550611 ZDHHC15Q96MV8 337 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 BCL2L13Q9BXK5 485 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 ZNF341Q9BYN7 854 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 NGRNQ9NPE2 291 aaKnown RBP4.68□□□□□ -1.66
LIMA1-206ENST00000550611 MIS18AQ9NYP9 233 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 UBP1Q9NZI7 540 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 ZNF451Q9Y4E5 1061 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 TTC28Q96AY4 2481 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 ARFGEF2Q9Y6D5 1785 aa4.68□□□□□ -1.66
LIMA1-206ENST00000550611 NPIPB8E9PQR5 432 aa4.67□□□□□ -1.66
LIMA1-206ENST00000550611 NTRK1P04629 796 aa4.67□□□□□ -1.66
LIMA1-206ENST00000550611 GPTP24298 496 aa4.67□□□□□ -1.66
LIMA1-206ENST00000550611 TNIP1Q15025 636 aa4.67□□□□□ -1.66
LIMA1-206ENST00000550611 PARP10Q53GL7 1025 aa4.67□□□□□ -1.66
LIMA1-206ENST00000550611 MIIPQ5JXC2 388 aa4.67□□□□□ -1.66
LIMA1-206ENST00000550611 DNAJC14Q6Y2X3 702 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-206ENST00000550611 ARHGEF18Q6ZSZ5 1173 aa4.67□□□□□ -1.66
LIMA1-206ENST00000550611 SUPT20HQ8NEM7 779 aa4.67□□□□□ -1.66
LIMA1-206ENST00000550611 RTF1Q92541 710 aaKnown RBP4.67□□□□□ -1.66
LIMA1-206ENST00000550611 CHFRQ96EP1 664 aa4.67□□□□□ -1.66
LIMA1-206ENST00000550611 MCMBPQ9BTE3 642 aa4.67□□□□□ -1.66
LIMA1-206ENST00000550611 VTI1BQ9UEU0 232 aa4.67□□□□□ -1.66
LIMA1-206ENST00000550611 ADAMTS1Q9UHI8 967 aa4.67□□□□□ -1.66
LIMA1-206ENST00000550611 SIT1Q9Y3P8 196 aa4.67□□□□□ -1.66
LIMA1-206ENST00000550611 ABCC4O15439 1325 aa4.67□□□□□ -1.66
LIMA1-206ENST00000550611 SIPA1L3O60292 1781 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-206ENST00000550611 BCORQ6W2J9 1755 aa4.66□□□□□ -1.66
LIMA1-206ENST00000550611 TRBV23OR9-2A0A075B6M9 112 aa4.66□□□□□ -1.66
LIMA1-206ENST00000550611 FAM86C2PA6NEL3 165 aa4.66□□□□□ -1.66
LIMA1-206ENST00000550611 CYP1A1P04798 512 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-206ENST00000550611 IMPDH2P12268 514 aa4.66□□□□□ -1.66
LIMA1-206ENST00000550611 ERCC3P19447 782 aa4.66□□□□□ -1.66
LIMA1-206ENST00000550611 SEPHS1P49903 392 aa4.66□□□□□ -1.66
LIMA1-206ENST00000550611 MAP3K12Q12852 859 aa4.66□□□□□ -1.66
LIMA1-206ENST00000550611 FOXE3Q13461 319 aa4.66□□□□□ -1.66
LIMA1-206ENST00000550611 DPP8Q6V1X1 898 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-206ENST00000550611 PPP1R42Q7Z4L9 355 aa4.66□□□□□ -1.66
LIMA1-206ENST00000550611 NGEFQ8N5V2 710 aa4.66□□□□□ -1.66
LIMA1-206ENST00000550611 Q8TCH9 128 aa4.66□□□□□ -1.66
LIMA1-206ENST00000550611 PNISRQ8TF01 805 aaKnown RBP4.66□□□□□ -1.66
LIMA1-206ENST00000550611 SH3TC2Q8TF17 1288 aa4.66□□□□□ -1.66
LIMA1-206ENST00000550611 GIPC2Q8TF65 315 aa4.66□□□□□ -1.66
LIMA1-206ENST00000550611 CDCA5Q96FF9 252 aa4.66□□□□□ -1.66
LIMA1-206ENST00000550611 ZNF333Q96JL9 665 aa4.66□□□□□ -1.66
LIMA1-206ENST00000550611 GUCD1Q96NT3 240 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms