RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 CD207Q9UJ71 328 aa12.18□□□□□ -0.46
VTI1BP3-201ENST00000550220 PCDHA12Q9UN75 941 aa12.18□□□□□ -0.46
VTI1BP3-201ENST00000550220 XIRP2A4UGR9 3374 aa12.18□□□□□ -0.46
VTI1BP3-201ENST00000550220 A0A087WZ62 844 aa12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 GPR37L1O60883 481 aa12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 FDPSP14324 419 aaKnown RBP12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 DNAJB1P25685 340 aa12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 YWHABP31946 246 aaKnown RBP12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 ALDH7A1P49419 539 aaKnown RBP12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 NDUFV1P49821 464 aa12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 POLGP54098 1239 aaPredicted RBP12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 TMEM31Q5JXX7 168 aa12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 KCNT2Q6UVM3 1135 aa12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 SRGAP1Q7Z6B7 1085 aa12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 RNF169Q8NCN4 708 aa12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 PSPC1Q8WXF1 523 aaKnown RBP12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 PGBD4Q96DM1 585 aa12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 CASD1Q96PB1 797 aa12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 FDXACB1Q9BRP7 624 aaPredicted RBP12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 LLPHQ9BRT6 129 aaKnown RBP12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 DHX33Q9H6R0 707 aaKnown RBP12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 CWH43Q9H720 699 aa12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 SPG21Q9NZD8 308 aa12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 LIMCH1Q9UPQ0 1083 aa12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 MYO7AQ13402 2215 aa12.17□□□□□ -0.46
VTI1BP3-201ENST00000550220 COL4A4P53420 1690 aaPredicted RBP12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 MYH9P35579 1960 aaKnown RBP12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 ZNF623O75123 536 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 LYPLA2O95372 231 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 EYA4O95677 639 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 XRCC6P12956 609 aaKnown RBP eCLIP12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 IRS1P35568 1242 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 PHKA2P46019 1235 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 NRIP1P48552 1158 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 NCBP1Q09161 790 aaKnown RBP12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 COASYQ13057 564 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 DRP2Q13474 957 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 MXD4Q14582 209 aaPredicted RBP12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 CALCRLQ16602 461 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 TWF2Q6IBS0 349 aaKnown RBP12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 CATSPER4Q7RTX7 472 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 ZNF598Q86UK7 904 aaKnown RBP12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 NECAB1Q8N987 351 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 NSUN7Q8NE18 718 aaKnown RBP12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 TNFRSF25Q93038 417 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 LXNQ9BS40 222 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 EPHX3Q9H6B9 360 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 STK39Q9UEW8 545 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 ARIH1Q9Y4X5 557 aaPredicted RBP12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 COL4A3BPQ9Y5P4 624 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 RALGAPA2Q2PPJ7 1873 aa12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 TCF20Q9UGU0 1960 aaKnown RBP12.16□□□□□ -0.46
VTI1BP3-201ENST00000550220 C19orf67A6NJJ6 358 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 FSCN2O14926 492 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 MBTPS2O43462 519 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 ZP2Q05996 745 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 POU5F1BQ06416 359 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 NR5A1Q13285 461 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 ORC2Q13416 577 aaPredicted RBP12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 XKR9Q5GH70 373 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 NCAPH2Q6IBW4 605 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 GLB1LQ6UWU2 654 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 LRRC55Q6ZSA7 311 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 TPH2Q8IWU9 490 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 DIS3L2Q8IYB7 885 aaKnown RBP12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 CNNM3Q8NE01 707 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 PRPF31Q8WWY3 499 aaKnown RBP12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 ZNF668Q96K58 619 aaPredicted RBP12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 ZSCAN31Q96LW9 406 aaPredicted RBP12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 NLRP4Q96MN2 994 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 HSD17B14Q9BPX1 270 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 SH2D3AQ9BRG2 576 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 GJB4Q9NTQ9 266 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 ANKEF1Q9NU02 776 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 KANSL3Q9P2N6 904 aa12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 DAXXQ9UER7 740 aaPredicted RBP12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 PIN4Q9Y237 131 aaKnown RBP12.15□□□□□ -0.46
VTI1BP3-201ENST00000550220 TMEM150BA6NC51 233 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 BTBD18B2RXH4 712 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 DCXO43602 365 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 NEMFO60524 1076 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 TBX10O75333 385 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 DGAT1O75907 488 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 SLITRK3O94933 977 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 CSPG5O95196 566 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 SRGAP2CP0DJJ0 459 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 FGFR4P22455 802 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 NPEPPSP55786 919 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 DLX2Q07687 328 aaPredicted RBP12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 SPIRE1Q08AE8 756 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 LAMTOR4Q0VGL1 99 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 GIT2Q14161 759 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 TFDP1Q14186 410 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 EMC2Q15006 297 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 DUSP6Q16828 381 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 EARS2Q5JPH6 523 aaKnown RBP12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 CLLU1OSQ5K130 101 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 PLA2G4FQ68DD2 849 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 TMEM184AQ6ZMB5 413 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 ADGRD2Q7Z7M1 963 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms