RNA–Protein interactions for RNA: ENST00000546215.5

SCARB1-211, Transcript of scavenger receptor class B member 1, humanhuman

TSL 1 (best) BASIC

Gene SCARB1, Length 1,597 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-211ENST00000546215 TIPINQ9BVW5 301 aa23.04■■□□□ 1.28
SCARB1-211ENST00000546215 IFIH1Q9BYX4 1025 aaKnown RBP23.04■■□□□ 1.28
SCARB1-211ENST00000546215 NPHP3-ACAD11A0A0J9YXS1 232 aa23.03■■□□□ 1.28
SCARB1-211ENST00000546215 HIP1RO75146 1068 aa23.03■■□□□ 1.28
SCARB1-211ENST00000546215 FGBP02675 491 aa23.03■■□□□ 1.28
SCARB1-211ENST00000546215 CD52P31358 61 aa23.03■■□□□ 1.28
SCARB1-211ENST00000546215 POU5F1BQ06416 359 aa23.03■■□□□ 1.28
SCARB1-211ENST00000546215 RAD51AP2Q09MP3 1159 aa23.03■■□□□ 1.28
SCARB1-211ENST00000546215 CAPSQ13938 189 aa23.03■■□□□ 1.28
SCARB1-211ENST00000546215 C9orf50Q5SZB4 431 aa23.03■■□□□ 1.28
SCARB1-211ENST00000546215 CNKSR3Q6P9H4 555 aa23.03■■□□□ 1.28
SCARB1-211ENST00000546215 SV2BQ7L1I2 683 aa23.03■■□□□ 1.28
SCARB1-211ENST00000546215 BSNDQ8WZ55 320 aa23.03■■□□□ 1.28
SCARB1-211ENST00000546215 GCOM2Q9BZD3 368 aaPredicted RBP23.03■■□□□ 1.28
SCARB1-211ENST00000546215 CUEDC2Q9H467 287 aa23.03■■□□□ 1.28
SCARB1-211ENST00000546215 PADI3Q9ULW8 664 aa23.03■■□□□ 1.28
SCARB1-211ENST00000546215 LAMA3Q16787 3333 aa23.03■■□□□ 1.28
SCARB1-211ENST00000546215 CSDE1O75534 798 aaKnown RBP23.02■■□□□ 1.28
SCARB1-211ENST00000546215 RPS6KA5O75582 802 aa23.02■■□□□ 1.28
SCARB1-211ENST00000546215 TPRNQ4KMQ1 711 aa23.02■■□□□ 1.28
SCARB1-211ENST00000546215 OTOP2Q7RTS6 562 aa23.02■■□□□ 1.28
SCARB1-211ENST00000546215 FAM228AQ86W67 206 aa23.02■■□□□ 1.28
SCARB1-211ENST00000546215 SEPT8Q92599 483 aa23.02■■□□□ 1.28
SCARB1-211ENST00000546215 NDUFA8P51970 172 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 TFDP1Q14186 410 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 SHHQ15465 462 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 CLEC17AQ6ZS10 378 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 FSIP1Q8NA03 581 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 MRPS27Q92552 414 aaKnown RBP23.01■■□□□ 1.27
SCARB1-211ENST00000546215 DRC1Q96MC2 740 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 PYM1Q9BRP8 204 aaKnown RBP23.01■■□□□ 1.27
SCARB1-211ENST00000546215 GOLPH3LQ9H4A5 285 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 ERVK-5Q9HDB9 667 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 KBTBD4Q9NVX7 518 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 MYMKA6NI61 221 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 PTENP60484 403 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 PAK2Q13177 524 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 GIT2Q14161 759 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 CSPP1Q1MSJ5 1256 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 IFNLR1Q8IU57 520 aaPredicted RBP23.01■■□□□ 1.27
SCARB1-211ENST00000546215 TMEM87AQ8NBN3 555 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 HERVK_113Q902F9 699 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 APBB2Q92870 758 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 REEP2Q9BRK0 252 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 NFKBIZQ9BYH8 718 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 MINDY3Q9H8M7 445 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 ST3GAL5Q9UNP4 418 aa23.01■■□□□ 1.27
SCARB1-211ENST00000546215 SFI1A8K8P3 1242 aa23■■□□□ 1.27
SCARB1-211ENST00000546215 GPR182O15218 404 aa23■■□□□ 1.27
SCARB1-211ENST00000546215 ACTN1P12814 892 aa23■■□□□ 1.27
SCARB1-211ENST00000546215 NAMPTP43490 491 aa23■■□□□ 1.27
SCARB1-211ENST00000546215 CACNB1Q02641 598 aaPredicted RBP23■■□□□ 1.27
SCARB1-211ENST00000546215 RASIP1Q5U651 963 aa23■■□□□ 1.27
SCARB1-211ENST00000546215 SRGAP1Q7Z6B7 1085 aa23■■□□□ 1.27
SCARB1-211ENST00000546215 IFT74Q96LB3 600 aa23■■□□□ 1.27
SCARB1-211ENST00000546215 INO80BQ9C086 356 aaPredicted RBP23■■□□□ 1.27
SCARB1-211ENST00000546215 TNMDQ9H2S6 317 aa23■■□□□ 1.27
SCARB1-211ENST00000546215 ODF2LQ9ULJ1 636 aa23■■□□□ 1.27
SCARB1-211ENST00000546215 COLQQ9Y215 455 aaPredicted RBP23■■□□□ 1.27
SCARB1-211ENST00000546215 GOLGA6L4A6NEF3 574 aa22.99■■□□□ 1.27
SCARB1-211ENST00000546215 FGFR4P22455 802 aa22.99■■□□□ 1.27
SCARB1-211ENST00000546215 SYKP43405 635 aa22.99■■□□□ 1.27
SCARB1-211ENST00000546215 PHKA2P46019 1235 aa22.99■■□□□ 1.27
SCARB1-211ENST00000546215 NFX1Q12986 1120 aaKnown RBP22.99■■□□□ 1.27
SCARB1-211ENST00000546215 IKBKEQ14164 716 aa22.99■■□□□ 1.27
SCARB1-211ENST00000546215 PPP2R5AQ15172 486 aa22.99■■□□□ 1.27
SCARB1-211ENST00000546215 CDCA2Q69YH5 1023 aaPredicted RBP22.99■■□□□ 1.27
SCARB1-211ENST00000546215 DDX12PQ92771 950 aa22.99■■□□□ 1.27
SCARB1-211ENST00000546215 STAMQ92783 540 aa22.99■■□□□ 1.27
SCARB1-211ENST00000546215 TMX1Q9H3N1 280 aa22.99■■□□□ 1.27
SCARB1-211ENST00000546215 C17orf75Q9HAS0 396 aa22.99■■□□□ 1.27
SCARB1-211ENST00000546215 CXXC1Q9P0U4 656 aaPredicted RBP22.99■■□□□ 1.27
SCARB1-211ENST00000546215 MYH11P35749 1972 aa22.99■■□□□ 1.27
SCARB1-211ENST00000546215 ABHD14A-ACY1A0A1B0GW23 586 aa22.98■■□□□ 1.27
SCARB1-211ENST00000546215 LRRIQ4A6NIV6 560 aa22.98■■□□□ 1.27
SCARB1-211ENST00000546215 ACTN4O43707 911 aaKnown RBP22.98■■□□□ 1.27
SCARB1-211ENST00000546215 BAIAP3O94812 1187 aa22.98■■□□□ 1.27
SCARB1-211ENST00000546215 ODR4Q5SWX8 454 aa22.98■■□□□ 1.27
SCARB1-211ENST00000546215 TDHQ8IZJ6 230 aa22.98■■□□□ 1.27
SCARB1-211ENST00000546215 DNAJC19Q96DA6 116 aa22.98■■□□□ 1.27
SCARB1-211ENST00000546215 MAGEF1Q9HAY2 307 aa22.98■■□□□ 1.27
SCARB1-211ENST00000546215 SERTAD1Q9UHV2 236 aa22.98■■□□□ 1.27
SCARB1-211ENST00000546215 KRT18P05783 430 aaKnown RBP22.97■■□□□ 1.27
SCARB1-211ENST00000546215 SLFN14P0C7P3 912 aa22.97■■□□□ 1.27
SCARB1-211ENST00000546215 PLS3P13797 630 aa22.97■■□□□ 1.27
SCARB1-211ENST00000546215 NPTX2P47972 431 aa22.97■■□□□ 1.27
SCARB1-211ENST00000546215 ZNF131P52739 623 aa22.97■■□□□ 1.27
SCARB1-211ENST00000546215 PEX3P56589 373 aa22.97■■□□□ 1.27
SCARB1-211ENST00000546215 LONRF3Q496Y0 759 aa22.97■■□□□ 1.27
SCARB1-211ENST00000546215 DYMQ7RTS9 669 aa22.97■■□□□ 1.27
SCARB1-211ENST00000546215 MICAL3Q7RTP6 2002 aa22.97■■□□□ 1.27
SCARB1-211ENST00000546215 GADD45BO75293 160 aaPredicted RBP22.97■■□□□ 1.27
SCARB1-211ENST00000546215 SFPQP23246 707 aaKnown RBP eCLIP22.97■■□□□ 1.272e-6■■□□□ 12.9
SCARB1-211ENST00000546215 MBTD1Q05BQ5 628 aa22.97■■□□□ 1.27
SCARB1-211ENST00000546215 DMP1Q13316 513 aaPredicted RBP22.97■■□□□ 1.27
SCARB1-211ENST00000546215 RNPC3Q96LT9 517 aaKnown RBP22.97■■□□□ 1.27
SCARB1-211ENST00000546215 NTPCRQ9BSD7 190 aaKnown RBP22.97■■□□□ 1.27
SCARB1-211ENST00000546215 KIFC3Q9BVG8 833 aa22.97■■□□□ 1.27
SCARB1-211ENST00000546215 FTHL17Q9BXU8 183 aa22.97■■□□□ 1.27
SCARB1-211ENST00000546215 USP25Q9UHP3 1055 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms