RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 ZMYND12Q9H0C1 365 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 ADAMTS10Q9H324 1103 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 DISC1Q9NRI5 854 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 RNF19AQ9NV58 838 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 CACNA1HO95180 2353 aa13.83□□□□□ -0.19
SNHG1-216ENST00000541416 MYO15AQ9UKN7 3530 aa13.83□□□□□ -0.2
SNHG1-216ENST00000541416 ZC3H11AO75152 810 aaKnown RBP eCLIP13.83□□□□□ -0.2
SNHG1-216ENST00000541416 SFPQP23246 707 aaKnown RBP eCLIP13.83□□□□□ -0.2
SNHG1-216ENST00000541416 NBL1P41271 181 aa13.83□□□□□ -0.2
SNHG1-216ENST00000541416 GPC3P51654 580 aa13.83□□□□□ -0.2
SNHG1-216ENST00000541416 JAK3P52333 1124 aa13.83□□□□□ -0.2
SNHG1-216ENST00000541416 ELMSAN1Q6PJG2 1045 aa13.83□□□□□ -0.2
SNHG1-216ENST00000541416 GLB1LQ6UWU2 654 aa13.83□□□□□ -0.2
SNHG1-216ENST00000541416 CABP7Q86V35 215 aa13.83□□□□□ -0.2
SNHG1-216ENST00000541416 CRYGNQ8WXF5 182 aa13.83□□□□□ -0.2
SNHG1-216ENST00000541416 CYP26B1Q9NR63 512 aa13.83□□□□□ -0.2
SNHG1-216ENST00000541416 BRPF3Q9ULD4 1205 aa13.83□□□□□ -0.2
SNHG1-216ENST00000541416 IRAK3Q9Y616 596 aa13.83□□□□□ -0.2
SNHG1-216ENST00000541416 GAS7O60861 476 aa13.82□□□□□ -0.2
SNHG1-216ENST00000541416 CTSAP10619 480 aa13.82□□□□□ -0.2
SNHG1-216ENST00000541416 CIITAP33076 1130 aa13.82□□□□□ -0.2
SNHG1-216ENST00000541416 EXOSC10Q01780 885 aaKnown RBP13.82□□□□□ -0.2
SNHG1-216ENST00000541416 PRKCEQ02156 737 aa13.82□□□□□ -0.2
SNHG1-216ENST00000541416 RNASELQ05823 741 aaKnown RBP13.82□□□□□ -0.2
SNHG1-216ENST00000541416 TWF2Q6IBS0 349 aaKnown RBP13.82□□□□□ -0.2
SNHG1-216ENST00000541416 OTOP3Q7RTS5 596 aa13.82□□□□□ -0.2
SNHG1-216ENST00000541416 DDX53Q86TM3 631 aaKnown RBP13.82□□□□□ -0.2
SNHG1-216ENST00000541416 ZNF598Q86UK7 904 aaKnown RBP13.82□□□□□ -0.2
SNHG1-216ENST00000541416 LINC01465Q8N7H1 131 aa13.82□□□□□ -0.2
SNHG1-216ENST00000541416 TMEM105Q8N8V8 129 aa13.82□□□□□ -0.2
SNHG1-216ENST00000541416 CCDC148Q8NFR7 591 aa13.82□□□□□ -0.2
SNHG1-216ENST00000541416 NKD2Q969F2 451 aaPredicted RBP13.82□□□□□ -0.2
SNHG1-216ENST00000541416 RIT2Q99578 217 aa13.82□□□□□ -0.2
SNHG1-216ENST00000541416 TRAIPQ9BWF2 469 aa13.82□□□□□ -0.2
SNHG1-216ENST00000541416 EMILIN2Q9BXX0 1053 aa13.82□□□□□ -0.2
SNHG1-216ENST00000541416 ZBP1Q9H171 429 aa13.82□□□□□ -0.2
SNHG1-216ENST00000541416 LIMD1Q9UGP4 676 aa13.82□□□□□ -0.2
SNHG1-216ENST00000541416 MYO10Q9HD67 2058 aa13.82□□□□□ -0.2
SNHG1-216ENST00000541416 PRR23AA6NEV1 266 aa13.81□□□□□ -0.2
SNHG1-216ENST00000541416 NT5C1B-RDH14C9J2C7 533 aa13.81□□□□□ -0.2
SNHG1-216ENST00000541416 PHKA2P46019 1235 aa13.81□□□□□ -0.2
SNHG1-216ENST00000541416 RAB27AP51159 221 aa13.81□□□□□ -0.2
SNHG1-216ENST00000541416 COL9A3Q14050 684 aaPredicted RBP13.81□□□□□ -0.2
SNHG1-216ENST00000541416 CCDC149Q6ZUS6 474 aa13.81□□□□□ -0.2
SNHG1-216ENST00000541416 RDM1Q8NG50 284 aa13.81□□□□□ -0.2
SNHG1-216ENST00000541416 URGCPQ8TCY9 931 aa13.81□□□□□ -0.2
SNHG1-216ENST00000541416 PGBD4Q96DM1 585 aa13.81□□□□□ -0.2
SNHG1-216ENST00000541416 JPH2Q9BR39 696 aaPredicted RBP13.81□□□□□ -0.2
SNHG1-216ENST00000541416 TEKT3Q9BXF9 490 aa13.81□□□□□ -0.2
SNHG1-216ENST00000541416 SFXN1Q9H9B4 322 aa13.81□□□□□ -0.2
SNHG1-216ENST00000541416 DPP7Q9UHL4 492 aa13.81□□□□□ -0.2
SNHG1-216ENST00000541416 CHMP2AO43633 222 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 ASGR2P07307 311 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 CDC27P30260 824 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 USP11P51784 963 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 TDGQ13569 410 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 NONOQ15233 471 aaKnown RBP eCLIP13.8□□□□□ -0.2
SNHG1-216ENST00000541416 TSGA10IPQ3SY00 556 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 NOMO2Q5JPE7 1267 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 LRCH2Q5VUJ6 765 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 ASCL5Q7RTU5 278 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 ZNF410Q86VK4 478 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 C12orf76Q8N812 135 aaPredicted RBP13.8□□□□□ -0.2
SNHG1-216ENST00000541416 IGSF21Q96ID5 467 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 ZNF668Q96K58 619 aaPredicted RBP13.8□□□□□ -0.2
SNHG1-216ENST00000541416 TCEANC2Q96MN5 208 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 RTP3Q9BQQ7 232 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 C22orf23Q9BZE7 217 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 SEPT9Q9UHD8 586 aaPredicted RBP13.8□□□□□ -0.2
SNHG1-216ENST00000541416 CDH22Q9UJ99 828 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 PIN4Q9Y237 131 aaKnown RBP13.8□□□□□ -0.2
SNHG1-216ENST00000541416 PLXNA3P51805 1871 aa13.8□□□□□ -0.2
SNHG1-216ENST00000541416 PRPF3O43395 683 aaKnown RBP13.79□□□□□ -0.2
SNHG1-216ENST00000541416 ZNF862O60290 1169 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 WEE2P0C1S8 567 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 EPCAMP16422 314 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 FGFR4P22455 802 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 ADD1P35611 737 aaKnown RBP13.79□□□□□ -0.2
SNHG1-216ENST00000541416 MTERF2Q49AM1 385 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 XKR3Q5GH77 459 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 TMC5Q6UXY8 1006 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 ERMP1Q7Z2K6 904 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 GPR149Q86SP6 731 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 FLCNQ8NFG4 579 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 CCDC136Q96JN2 1154 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 FAM193BQ96PV7 902 aaPredicted RBP13.79□□□□□ -0.2
SNHG1-216ENST00000541416 FAM217BQ9NTX9 383 aaPredicted RBP13.79□□□□□ -0.2
SNHG1-216ENST00000541416 KANSL3Q9P2N6 904 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 FBXL21Q9UKT6 434 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 SSX2IPQ9Y2D8 614 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 INPP5FQ9Y2H2 1132 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 WDR81Q562E7 1941 aa13.79□□□□□ -0.2
SNHG1-216ENST00000541416 PTPRZ1P23471 2315 aaPredicted RBP13.78□□□□□ -0.2
SNHG1-216ENST00000541416 MSH4O15457 936 aa13.78□□□□□ -0.2
SNHG1-216ENST00000541416 GALTP07902 379 aa13.78□□□□□ -0.2
SNHG1-216ENST00000541416 RFX1P22670 979 aa13.78□□□□□ -0.2
SNHG1-216ENST00000541416 KLRC2P26717 231 aa13.78□□□□□ -0.2
SNHG1-216ENST00000541416 C15orf39Q6ZRI6 1047 aa13.78□□□□□ -0.2
SNHG1-216ENST00000541416 CATSPER4Q7RTX7 472 aa13.78□□□□□ -0.2
SNHG1-216ENST00000541416 MIER3Q7Z3K6 550 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms