RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 MXD4Q14582 209 aaPredicted RBP19.5■□□□□ 0.71
CLIP1-215ENST00000541108 KRT31Q15323 416 aa19.5■□□□□ 0.71
CLIP1-215ENST00000541108 ACCSQ96QU6 501 aa19.5■□□□□ 0.71
CLIP1-215ENST00000541108 CETN3O15182 167 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 KPNA6O60684 536 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 MARSP56192 900 aaKnown RBP19.49■□□□□ 0.71
CLIP1-215ENST00000541108 GJA9P57773 515 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 MYBPC2Q14324 1141 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 RETREG2Q8NC44 543 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 ZNF296Q8WUU4 475 aaPredicted RBP19.49■□□□□ 0.71
CLIP1-215ENST00000541108 CNOT6LQ96LI5 555 aaKnown RBP19.49■□□□□ 0.71
CLIP1-215ENST00000541108 ARHGAP28Q9P2N2 729 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 EXOC7Q9UPT5 735 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 ZMYM2Q9UBW7 1377 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 GOLGA6L6A8MZA4 724 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 ADCY3O60266 1144 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 HMGCRP04035 888 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 GLRA2P23416 452 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 NR2F2P24468 414 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 DNM2P50570 870 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 FSCN1Q16658 493 aaKnown RBP19.49■□□□□ 0.71
CLIP1-215ENST00000541108 DRC7Q8IY82 874 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 SYCP3Q8IZU3 236 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 RAET1EQ8TD07 263 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 BEGAINQ9BUH8 593 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 RTN4Q9NQC3 1192 aaKnown RBP19.49■□□□□ 0.71
CLIP1-215ENST00000541108 TBX20Q9UMR3 447 aa19.49■□□□□ 0.71
CLIP1-215ENST00000541108 DENND3A2RUS2 1198 aa19.48■□□□□ 0.71
CLIP1-215ENST00000541108 ASAP2O43150 1006 aa19.48■□□□□ 0.71
CLIP1-215ENST00000541108 TPM2P07951 284 aa19.48■□□□□ 0.71
CLIP1-215ENST00000541108 HSPA6P17066 643 aa19.48■□□□□ 0.71
CLIP1-215ENST00000541108 COPB1P53618 953 aaKnown RBP19.48■□□□□ 0.71
CLIP1-215ENST00000541108 MAP3K21Q5TCX8 1036 aa19.48■□□□□ 0.71
CLIP1-215ENST00000541108 CREBRFQ8IUR6 639 aa19.48■□□□□ 0.71
CLIP1-215ENST00000541108 SLC9A9Q8IVB4 645 aa19.48■□□□□ 0.71
CLIP1-215ENST00000541108 MAP4K3Q8IVH8 894 aa19.48■□□□□ 0.71
CLIP1-215ENST00000541108 PSPC1Q8WXF1 523 aaKnown RBP19.48■□□□□ 0.71
CLIP1-215ENST00000541108 EEF2KMTQ96G04 330 aa19.48■□□□□ 0.71
CLIP1-215ENST00000541108 TUBGCP2Q9BSJ2 902 aa19.48■□□□□ 0.71
CLIP1-215ENST00000541108 UPF3AQ9H1J1 476 aaKnown RBP19.48■□□□□ 0.71
CLIP1-215ENST00000541108 SPC25Q9HBM1 224 aa19.48■□□□□ 0.71
CLIP1-215ENST00000541108 PCNTO95613 3336 aa19.47■□□□□ 0.71
CLIP1-215ENST00000541108 RRN3P2A6NIE6 340 aa19.47■□□□□ 0.71
CLIP1-215ENST00000541108 N4BP3O15049 544 aa19.47■□□□□ 0.71
CLIP1-215ENST00000541108 C22orf31O95567 290 aa19.47■□□□□ 0.71
CLIP1-215ENST00000541108 NR3C1P04150 777 aa19.47■□□□□ 0.71
CLIP1-215ENST00000541108 RARBP10826 455 aa19.47■□□□□ 0.71
CLIP1-215ENST00000541108 PRKAR2AP13861 404 aaKnown RBP19.47■□□□□ 0.71
CLIP1-215ENST00000541108 MKRN4PQ13434 485 aaPredicted RBP19.47■□□□□ 0.71
CLIP1-215ENST00000541108 HS1BP3Q53T59 392 aa19.47■□□□□ 0.71
CLIP1-215ENST00000541108 EFCAB12Q6NXP0 572 aa19.47■□□□□ 0.71
CLIP1-215ENST00000541108 KSR1Q8IVT5 923 aa19.47■□□□□ 0.71
CLIP1-215ENST00000541108 C12orf56Q8IXR9 622 aa19.47■□□□□ 0.71
CLIP1-215ENST00000541108 PRPF31Q8WWY3 499 aaKnown RBP19.47■□□□□ 0.71
CLIP1-215ENST00000541108 LENG1Q96BZ8 264 aaPredicted RBP19.47■□□□□ 0.71
CLIP1-215ENST00000541108 KATNAL1Q9BW62 490 aa19.47■□□□□ 0.71
CLIP1-215ENST00000541108 SUGCTQ9HAC7 445 aa19.47■□□□□ 0.71
CLIP1-215ENST00000541108 IMPACTQ9P2X3 320 aa19.47■□□□□ 0.71
CLIP1-215ENST00000541108 HAS3O00219 553 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 ELNP15502 786 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 KLRC1P26715 233 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 CNGA1P29973 690 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 PPFIA1Q13136 1202 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 ASAP3Q8TDY4 903 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 KAT2BQ92831 832 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 TMEM134Q9H6X4 195 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 AGPAT3Q9NRZ7 376 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 INTS13Q9NVM9 706 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 ADGRA3Q8IWK6 1321 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 NRCAMQ92823 1304 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 TMOD1P28289 359 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 MTIF2P46199 727 aaKnown RBP19.46■□□□□ 0.71
CLIP1-215ENST00000541108 TRIM32Q13049 653 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 GRIK4Q16099 956 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 KIAA0753Q2KHM9 967 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 VSTM4Q8IW00 320 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 LINC01465Q8N7H1 131 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 DEPTORQ8TB45 409 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 TRAPPC12Q8WVT3 735 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 TRIM44Q96DX7 344 aaPredicted RBP19.46■□□□□ 0.71
CLIP1-215ENST00000541108 MKNK1Q9BUB5 465 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 VPS16Q9H269 839 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 DMAC2Q9NW81 257 aa19.46■□□□□ 0.71
CLIP1-215ENST00000541108 SUCLA2Q9P2R7 463 aaPredicted RBP19.46■□□□□ 0.71
CLIP1-215ENST00000541108 PHLPP2Q6ZVD8 1323 aa19.45■□□□□ 0.7
CLIP1-215ENST00000541108 KAT6AQ92794 2004 aa19.45■□□□□ 0.7
CLIP1-215ENST00000541108 SLC16A3O15427 465 aaKnown RBP19.45■□□□□ 0.7
CLIP1-215ENST00000541108 C6orf222P0C671 652 aaPredicted RBP19.45■□□□□ 0.7
CLIP1-215ENST00000541108 EFNA5P52803 228 aa19.45■□□□□ 0.7
CLIP1-215ENST00000541108 POU5F1BQ06416 359 aa19.45■□□□□ 0.7
CLIP1-215ENST00000541108 DRP2Q13474 957 aa19.45■□□□□ 0.7
CLIP1-215ENST00000541108 CAPSQ13938 189 aa19.45■□□□□ 0.7
CLIP1-215ENST00000541108 MFSD10Q14728 455 aa19.45■□□□□ 0.7
CLIP1-215ENST00000541108 MTHFD1LQ6UB35 978 aa19.45■□□□□ 0.7
CLIP1-215ENST00000541108 FRMD5Q7Z6J6 570 aa19.45■□□□□ 0.7
CLIP1-215ENST00000541108 LRRC71Q8N4P6 559 aa19.45■□□□□ 0.7
CLIP1-215ENST00000541108 SPC24Q8NBT2 197 aa19.45■□□□□ 0.7
CLIP1-215ENST00000541108 SLAIN1Q8ND83 568 aa19.45■□□□□ 0.7
CLIP1-215ENST00000541108 KIFC3Q9BVG8 833 aa19.45■□□□□ 0.7
CLIP1-215ENST00000541108 METTL14Q9HCE5 456 aaKnown RBP19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms