RNA–Protein interactions for RNA: ENST00000539847.1

CCDC60-204, Transcript of coiled-coil domain containing 60, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CCDC60, Length 581 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-204ENST00000539847 ARHGAP4P98171 946 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 SPA17Q15506 151 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 PTPN21Q16825 1174 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 HSP90AA4PQ58FG1 418 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 SPECC1Q5M775 1068 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 TTC38Q5R3I4 469 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 WLSQ5T9L3 541 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 KLHL10Q6JEL2 608 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 USP49Q70CQ1 688 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 TEX11Q8IYF3 940 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 GRAMD1CQ8IYS0 662 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 ZNF654Q8IZM8 581 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 SPATA4Q8NEY3 305 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 CAGE1Q8TC20 777 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 WHAMMQ8TF30 809 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 ATRIPQ8WXE1 791 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 SECISBP2LQ93073 1101 aaKnown RBP8.39□□□□□ -1.07
CCDC60-204ENST00000539847 CCDC47Q96A33 483 aaKnown RBP8.39□□□□□ -1.07
CCDC60-204ENST00000539847 EPSTI1Q96J88 318 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 C12orf42Q96LP6 360 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 CCSER1Q9C0I3 900 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 NUCKS1Q9H1E3 243 aaKnown RBP8.39□□□□□ -1.07
CCDC60-204ENST00000539847 VPS16Q9H269 839 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 GDF3Q9NR23 364 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 SH3GLB2Q9NR46 395 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 STIM2Q9P246 746 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 SEPT3Q9UH03 358 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 KCNJ14Q9UNX9 436 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 PLAGL2Q9UPG8 496 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 CTNND2Q9UQB3 1225 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 HYOU1Q9Y4L1 999 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 CEP83Q9Y592 693 aa8.39□□□□□ -1.07
CCDC60-204ENST00000539847 DNMT3AQ9Y6K1 912 aaPredicted RBP8.39□□□□□ -1.07
CCDC60-204ENST00000539847 LOC102724159A0A0B4J2E5 919 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 GSG1L2A8MUP6 293 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 PSMA7O14818 248 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 DDAH1O94760 285 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 FGFR1OPO95684 399 aaKnown RBP8.38□□□□□ -1.07
CCDC60-204ENST00000539847 HOXC6P09630 235 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 CYP2B6P20813 491 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 CALML3P27482 149 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 ERVK-9P63128 1117 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 CACNB2Q08289 660 aaPredicted RBP8.38□□□□□ -1.07
CCDC60-204ENST00000539847 IFFO1Q0D2I5 559 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 PAK2Q13177 524 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 NR5A1Q13285 461 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 PWP2Q15269 919 aaKnown RBP8.38□□□□□ -1.07
CCDC60-204ENST00000539847 SEC23AQ15436 765 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 PKN1Q16512 942 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 PREPLQ4J6C6 727 aaPredicted RBP8.38□□□□□ -1.07
CCDC60-204ENST00000539847 PLA2G2CQ5R387 149 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 GALNT17Q6IS24 598 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 C6orf89Q6UWU4 347 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 LBX2Q6XYB7 198 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 PLEKHH3Q7Z736 793 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 CCDC84Q86UT8 332 aaPredicted RBP8.38□□□□□ -1.07
CCDC60-204ENST00000539847 RAB11FIP4Q86YS3 637 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 RGL4Q8IZJ4 473 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 GIMAP8Q8ND71 665 aaPredicted RBP8.38□□□□□ -1.07
CCDC60-204ENST00000539847 ESR2Q92731 530 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 SYN2Q92777 582 aaPredicted RBP8.38□□□□□ -1.07
CCDC60-204ENST00000539847 KAT2BQ92831 832 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 ALS2CR12Q96Q35 445 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 RUFY1Q96T51 708 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 P2RX7Q99572 595 aaKnown RBP8.38□□□□□ -1.07
CCDC60-204ENST00000539847 HINFPQ9BQA5 517 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 NHEJ1Q9H9Q4 299 aaPredicted RBP8.38□□□□□ -1.07
CCDC60-204ENST00000539847 SENP2Q9HC62 589 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 PIH1D3Q9NQM4 214 aaKnown RBP8.38□□□□□ -1.07
CCDC60-204ENST00000539847 EXOC1Q9NV70 894 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 TAB2Q9NYJ8 693 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 RBPJLQ9UBG7 517 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 RABGAP1Q9Y3P9 1069 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 ALPK3Q96L96 1907 aa8.38□□□□□ -1.07
CCDC60-204ENST00000539847 GOLGA6L7A0A1B0GV03 622 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 SSU72P8A0A1W2PR75 194 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 SLC15A5A6NIM6 579 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 PDE2AO00408 941 aaPredicted RBP8.37□□□□□ -1.07
CCDC60-204ENST00000539847 NDUFAB1O14561 156 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 RASSF9O75901 435 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 FAM107AO95990 144 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 IDEP14735 1019 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 CCNE1P24864 410 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 CCT6AP40227 531 aaKnown RBP8.37□□□□□ -1.07
CCDC60-204ENST00000539847 PRPHP41219 470 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 PRCPP42785 496 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 LIG3P49916 1009 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 NAP1L1P55209 391 aaKnown RBP8.37□□□□□ -1.07
CCDC60-204ENST00000539847 ACTN3Q08043 901 aaPredicted RBP8.37□□□□□ -1.07
CCDC60-204ENST00000539847 TBC1D8BQ0IIM8 1120 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 TRIM32Q13049 653 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 USP4Q13107 963 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 ORC2Q13416 577 aaPredicted RBP8.37□□□□□ -1.07
CCDC60-204ENST00000539847 NEDD9Q14511 834 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 RRP1BQ14684 758 aaKnown RBP8.37□□□□□ -1.07
CCDC60-204ENST00000539847 NBPF20Q3BBV1 942 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 CFAP221Q4G0U5 840 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 LACTB2Q53H82 288 aaPredicted RBP8.37□□□□□ -1.07
CCDC60-204ENST00000539847 SPDYCQ5MJ68 293 aa8.37□□□□□ -1.07
CCDC60-204ENST00000539847 CFAP58Q5T655 872 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms