RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 HIP1RO75146 1068 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 CSDE1O75534 798 aaKnown RBP13.37□□□□□ -0.27
CHD4-203ENST00000535717 PFKFB1P16118 471 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 EIF4BP23588 611 aaKnown RBP13.37□□□□□ -0.27
CHD4-203ENST00000535717 RAD51AP2Q09MP3 1159 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 MAPK7Q13164 816 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 CAPSQ13938 189 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 CNKSR3Q6P9H4 555 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 OTOP2Q7RTS6 562 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 RNF149Q8NC42 400 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 BSNDQ8WZ55 320 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 SEPT8Q92599 483 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 KIFAP3Q92845 792 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 DHX58Q96C10 678 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 GCOM2Q9BZD3 368 aaPredicted RBP13.37□□□□□ -0.27
CHD4-203ENST00000535717 IFT122Q9HBG6 1241 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 KCND2Q9NZV8 630 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 KCNH3Q9ULD8 1083 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 PADI3Q9ULW8 664 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 COLQQ9Y215 455 aaPredicted RBP13.37□□□□□ -0.27
CHD4-203ENST00000535717 HPSEQ9Y251 543 aa13.37□□□□□ -0.27
CHD4-203ENST00000535717 FAM237AA0A1B0GTK4 181 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 RPS6KA5O75582 802 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 ACTN1P12814 892 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 FGFR4P22455 802 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 POU5F1BQ06416 359 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 PAK2Q13177 524 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 TFDP1Q14186 410 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 SV2BQ7L1I2 683 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 FAM228AQ86W67 206 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 FSIP1Q8NA03 581 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 IQUBQ8NA54 791 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 HERVK_113Q902F9 699 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 REEP2Q9BRK0 252 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 TIPINQ9BVW5 301 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 GOLPH3LQ9H4A5 285 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 MINDY3Q9H8M7 445 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 ERVK-5Q9HDB9 667 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 CXXC1Q9P0U4 656 aaPredicted RBP13.36□□□□□ -0.27
CHD4-203ENST00000535717 ST3GAL5Q9UNP4 418 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 TRIOBPQ9H2D6 2365 aa13.36□□□□□ -0.27
CHD4-203ENST00000535717 MYMKA6NI61 221 aa13.35□□□□□ -0.27
CHD4-203ENST00000535717 LRRIQ4A6NIV6 560 aa13.35□□□□□ -0.27
CHD4-203ENST00000535717 SFI1A8K8P3 1242 aa13.35□□□□□ -0.27
CHD4-203ENST00000535717 PHKA2P46019 1235 aa13.35□□□□□ -0.27
CHD4-203ENST00000535717 NDUFA8P51970 172 aa13.35□□□□□ -0.27
CHD4-203ENST00000535717 PTENP60484 403 aa13.35□□□□□ -0.27
CHD4-203ENST00000535717 CACNB1Q02641 598 aaPredicted RBP13.35□□□□□ -0.27
CHD4-203ENST00000535717 NFX1Q12986 1120 aaKnown RBP13.35□□□□□ -0.27
CHD4-203ENST00000535717 GIT2Q14161 759 aa13.35□□□□□ -0.27
CHD4-203ENST00000535717 IKBKEQ14164 716 aa13.35□□□□□ -0.27
CHD4-203ENST00000535717 RASIP1Q5U651 963 aa13.35□□□□□ -0.27
CHD4-203ENST00000535717 IFNLR1Q8IU57 520 aaPredicted RBP13.35□□□□□ -0.27
CHD4-203ENST00000535717 TDHQ8IZJ6 230 aa13.35□□□□□ -0.27
CHD4-203ENST00000535717 MRPS27Q92552 414 aaKnown RBP13.35□□□□□ -0.27
CHD4-203ENST00000535717 APBB2Q92870 758 aa13.35□□□□□ -0.27
CHD4-203ENST00000535717 RNPC3Q96LT9 517 aaKnown RBP13.35□□□□□ -0.27
CHD4-203ENST00000535717 DRC1Q96MC2 740 aa13.35□□□□□ -0.27
CHD4-203ENST00000535717 TMX1Q9H3N1 280 aa13.35□□□□□ -0.27
CHD4-203ENST00000535717 CUEDC2Q9H467 287 aa13.35□□□□□ -0.27
CHD4-203ENST00000535717 ABHD14A-ACY1A0A1B0GW23 586 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 GOLGA6L4A6NEF3 574 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 GPR182O15218 404 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 BAIAP3O94812 1187 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 KRT18P05783 430 aaKnown RBP13.34□□□□□ -0.27
CHD4-203ENST00000535717 NAMPTP43490 491 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 PPP2R5AQ15172 486 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 CDCA2Q69YH5 1023 aaPredicted RBP13.34□□□□□ -0.27
CHD4-203ENST00000535717 CLEC17AQ6ZS10 378 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 SRGAP1Q7Z6B7 1085 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 RTN4RL1Q86UN2 441 aaPredicted RBP13.34□□□□□ -0.27
CHD4-203ENST00000535717 TMEM87AQ8NBN3 555 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 LINC01599Q8WXQ3 324 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 DDX12PQ92771 950 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 STAMQ92783 540 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 IFT74Q96LB3 600 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 PYM1Q9BRP8 204 aaKnown RBP13.34□□□□□ -0.27
CHD4-203ENST00000535717 NFKBIZQ9BYH8 718 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 INO80BQ9C086 356 aaPredicted RBP13.34□□□□□ -0.27
CHD4-203ENST00000535717 KBTBD4Q9NVX7 518 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 SERTAD1Q9UHV2 236 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 ODF2LQ9ULJ1 636 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 LAMA3Q16787 3333 aa13.34□□□□□ -0.27
CHD4-203ENST00000535717 ZBBXA8MT70 800 aa13.33□□□□□ -0.28
CHD4-203ENST00000535717 ENPP3O14638 875 aa13.33□□□□□ -0.28
CHD4-203ENST00000535717 ACTN4O43707 911 aaKnown RBP13.33□□□□□ -0.28
CHD4-203ENST00000535717 MGEA5O60502 916 aa13.33□□□□□ -0.28
CHD4-203ENST00000535717 GADD45BO75293 160 aaPredicted RBP13.33□□□□□ -0.28
CHD4-203ENST00000535717 SLFN14P0C7P3 912 aa13.33□□□□□ -0.28
CHD4-203ENST00000535717 PLS3P13797 630 aa13.33□□□□□ -0.28
CHD4-203ENST00000535717 SFPQP23246 707 aaKnown RBP eCLIP13.33□□□□□ -0.28
CHD4-203ENST00000535717 SYKP43405 635 aa13.33□□□□□ -0.28
CHD4-203ENST00000535717 NPTX2P47972 431 aa13.33□□□□□ -0.28
CHD4-203ENST00000535717 ZNF131P52739 623 aa13.33□□□□□ -0.28
CHD4-203ENST00000535717 PEX3P56589 373 aa13.33□□□□□ -0.28
CHD4-203ENST00000535717 WDR5P61964 334 aaKnown RBP13.33□□□□□ -0.28
CHD4-203ENST00000535717 MBTD1Q05BQ5 628 aa13.33□□□□□ -0.28
CHD4-203ENST00000535717 DSC3Q14574 896 aa13.33□□□□□ -0.28
CHD4-203ENST00000535717 CSPP1Q1MSJ5 1256 aa13.33□□□□□ -0.28
CHD4-203ENST00000535717 LONRF3Q496Y0 759 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 230.2 ms