RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 TMEM265A0A087WTH1 108 aa25.23■■□□□ 1.63
SFSWAP-204ENST00000535399 TLL1O43897 1013 aa25.23■■□□□ 1.63
SFSWAP-204ENST00000535399 CAPSQ13938 189 aa25.23■■□□□ 1.63
SFSWAP-204ENST00000535399 KRI1Q8N9T8 703 aaKnown RBP25.23■■□□□ 1.63
SFSWAP-204ENST00000535399 LRRC15Q8TF66 581 aa25.23■■□□□ 1.63
SFSWAP-204ENST00000535399 EPSTI1Q96J88 318 aa25.23■■□□□ 1.63
SFSWAP-204ENST00000535399 CDK5RAP3Q96JB5 506 aa25.23■■□□□ 1.63
SFSWAP-204ENST00000535399 RAD9AQ99638 391 aa25.23■■□□□ 1.63
SFSWAP-204ENST00000535399 ADAM2Q99965 735 aa25.23■■□□□ 1.63
SFSWAP-204ENST00000535399 ZBED2Q9BTP6 218 aa25.23■■□□□ 1.63
SFSWAP-204ENST00000535399 INO80BQ9C086 356 aaPredicted RBP25.23■■□□□ 1.63
SFSWAP-204ENST00000535399 SPTLC2O15270 562 aa25.22■■□□□ 1.63
SFSWAP-204ENST00000535399 PTENP60484 403 aa25.22■■□□□ 1.63
SFSWAP-204ENST00000535399 POU5F1BQ06416 359 aa25.22■■□□□ 1.63
SFSWAP-204ENST00000535399 KARSQ15046 597 aaKnown RBP25.22■■□□□ 1.63
SFSWAP-204ENST00000535399 FAM102BQ5T8I3 360 aa25.22■■□□□ 1.63
SFSWAP-204ENST00000535399 ZNF697Q5TEC3 545 aa25.22■■□□□ 1.63
SFSWAP-204ENST00000535399 ATL3Q6DD88 541 aa25.22■■□□□ 1.63
SFSWAP-204ENST00000535399 SRGAP1Q7Z6B7 1085 aa25.22■■□□□ 1.63
SFSWAP-204ENST00000535399 CRIPAKQ8N1N5 446 aa25.22■■□□□ 1.63
SFSWAP-204ENST00000535399 CALML4Q96GE6 196 aa25.22■■□□□ 1.63
SFSWAP-204ENST00000535399 SEMA6BQ9H3T3 888 aa25.22■■□□□ 1.63
SFSWAP-204ENST00000535399 MINDY3Q9H8M7 445 aa25.22■■□□□ 1.63
SFSWAP-204ENST00000535399 RGS18Q9NS28 235 aa25.22■■□□□ 1.63
SFSWAP-204ENST00000535399 DAXXQ9UER7 740 aaPredicted RBP25.22■■□□□ 1.63
SFSWAP-204ENST00000535399 PPP6R2O75170 966 aa25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 ARHGEF15O94989 841 aa25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 UPP2O95045 317 aa25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 CA3P07451 260 aa25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 SFPQP23246 707 aaKnown RBP eCLIP25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 HTRA4P83105 476 aaPredicted RBP25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 DNM1Q05193 864 aaKnown RBP25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 TFDP1Q14186 410 aa25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 C1orf186Q6ZWK4 172 aa25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 IFNLR1Q8IU57 520 aaPredicted RBP25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 DEFB123Q8N688 67 aa25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 SYT2Q8N9I0 419 aaPredicted RBP25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 SYMPKQ92797 1274 aaKnown RBP25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 RUSC1Q9BVN2 902 aa25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 C1orf112Q9NSG2 853 aa25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 PTPRSQ13332 1948 aa25.21■■□□□ 1.63
SFSWAP-204ENST00000535399 DENND3A2RUS2 1198 aa25.2■■□□□ 1.62
SFSWAP-204ENST00000535399 LCHNA4D1U4 455 aa25.2■■□□□ 1.62
SFSWAP-204ENST00000535399 C9IYK1 514 aa25.2■■□□□ 1.62
SFSWAP-204ENST00000535399 PLA2G4BP0C869 781 aa25.2■■□□□ 1.62
SFSWAP-204ENST00000535399 PLCG1P19174 1290 aa25.2■■□□□ 1.62
SFSWAP-204ENST00000535399 PHKA2P46019 1235 aa25.2■■□□□ 1.62
SFSWAP-204ENST00000535399 SARSP49591 514 aaKnown RBP25.2■■□□□ 1.62
SFSWAP-204ENST00000535399 SLC12A3P55017 1021 aa25.2■■□□□ 1.62
SFSWAP-204ENST00000535399 RINT1Q6NUQ1 792 aa25.2■■□□□ 1.62
SFSWAP-204ENST00000535399 BSNDQ8WZ55 320 aa25.2■■□□□ 1.62
SFSWAP-204ENST00000535399 ZNF576Q9H609 170 aa25.2■■□□□ 1.62
SFSWAP-204ENST00000535399 POLD4Q9HCU8 107 aa25.2■■□□□ 1.62
SFSWAP-204ENST00000535399 BLOC1S4Q9NUP1 217 aa25.2■■□□□ 1.62
SFSWAP-204ENST00000535399 LOXHD1Q8IVV2 1947 aa25.2■■□□□ 1.62
SFSWAP-204ENST00000535399 FAM189BP81408 668 aa25.19■■□□□ 1.62
SFSWAP-204ENST00000535399 SLC24A5Q71RS6 500 aa25.19■■□□□ 1.62
SFSWAP-204ENST00000535399 CATSPER4Q7RTX7 472 aa25.19■■□□□ 1.62
SFSWAP-204ENST00000535399 NPAS4Q8IUM7 802 aa25.19■■□□□ 1.62
SFSWAP-204ENST00000535399 NFKBIZQ9BYH8 718 aa25.19■■□□□ 1.62
SFSWAP-204ENST00000535399 SLC28A3Q9HAS3 691 aa25.19■■□□□ 1.62
SFSWAP-204ENST00000535399 INSL6Q9Y581 213 aa25.19■■□□□ 1.62
SFSWAP-204ENST00000535399 SSBP05455 408 aaKnown RBP eCLIP25.18■■□□□ 1.62
SFSWAP-204ENST00000535399 ZSCAN20P17040 1043 aaPredicted RBP25.18■■□□□ 1.62
SFSWAP-204ENST00000535399 DDIT3P35638 169 aa25.18■■□□□ 1.62
SFSWAP-204ENST00000535399 DAW1Q8N136 415 aa25.18■■□□□ 1.62
SFSWAP-204ENST00000535399 SP7Q8TDD2 431 aaPredicted RBP25.18■■□□□ 1.62
SFSWAP-204ENST00000535399 KIFAP3Q92845 792 aa25.18■■□□□ 1.62
SFSWAP-204ENST00000535399 FAM161BQ96MY7 647 aa25.18■■□□□ 1.62
SFSWAP-204ENST00000535399 CHST12Q9NRB3 414 aa25.18■■□□□ 1.62
SFSWAP-204ENST00000535399 MTMR10Q9NXD2 777 aa25.18■■□□□ 1.62
SFSWAP-204ENST00000535399 CHD9Q3L8U1 2897 aa25.18■■□□□ 1.62
SFSWAP-204ENST00000535399 TTC3P53804 2025 aa25.17■■□□□ 1.62
SFSWAP-204ENST00000535399 GUCY2CP25092 1073 aa25.17■■□□□ 1.62
SFSWAP-204ENST00000535399 TAP1Q03518 808 aa25.17■■□□□ 1.62
SFSWAP-204ENST00000535399 MBTD1Q05BQ5 628 aa25.17■■□□□ 1.62
SFSWAP-204ENST00000535399 MAPK7Q13164 816 aa25.17■■□□□ 1.62
SFSWAP-204ENST00000535399 PPP2R2DQ66LE6 453 aa25.17■■□□□ 1.62
SFSWAP-204ENST00000535399 CDCA2Q69YH5 1023 aaPredicted RBP25.17■■□□□ 1.62
SFSWAP-204ENST00000535399 RASSF8Q8NHQ8 419 aa25.17■■□□□ 1.62
SFSWAP-204ENST00000535399 KCNG4Q8TDN1 519 aa25.17■■□□□ 1.62
SFSWAP-204ENST00000535399 RAD54LQ92698 747 aa25.17■■□□□ 1.62
SFSWAP-204ENST00000535399 YME1L1Q96TA2 773 aa25.17■■□□□ 1.62
SFSWAP-204ENST00000535399 RC3H2Q9HBD1 1191 aaKnown RBP25.17■■□□□ 1.62
SFSWAP-204ENST00000535399 AGPAT5Q9NUQ2 364 aa25.17■■□□□ 1.62
SFSWAP-204ENST00000535399 CFAP45Q9UL16 551 aa25.17■■□□□ 1.62
SFSWAP-204ENST00000535399 LRRIQ4A6NIV6 560 aa25.16■■□□□ 1.62
SFSWAP-204ENST00000535399 HIP1RO75146 1068 aa25.16■■□□□ 1.62
SFSWAP-204ENST00000535399 SLC34A2O95436 690 aa25.16■■□□□ 1.62
SFSWAP-204ENST00000535399 ZNF689Q96CS4 500 aaPredicted RBP25.16■■□□□ 1.62
SFSWAP-204ENST00000535399 CHAMP1Q96JM3 812 aa25.16■■□□□ 1.62
SFSWAP-204ENST00000535399 TIPINQ9BVW5 301 aa25.16■■□□□ 1.62
SFSWAP-204ENST00000535399 RCOR1Q9UKL0 485 aa25.16■■□□□ 1.62
SFSWAP-204ENST00000535399 PIN4Q9Y237 131 aaKnown RBP25.16■■□□□ 1.62
SFSWAP-204ENST00000535399 INO80B-WBP1J3KQ70 363 aa25.15■■□□□ 1.62
SFSWAP-204ENST00000535399 DGKIO75912 1065 aa25.15■■□□□ 1.62
SFSWAP-204ENST00000535399 STAG3L1P0CL83 205 aa25.15■■□□□ 1.62
SFSWAP-204ENST00000535399 HOXA11P31270 313 aaPredicted RBP25.15■■□□□ 1.62
SFSWAP-204ENST00000535399 NAMPTP43490 491 aa25.15■■□□□ 1.62
SFSWAP-204ENST00000535399 MCM6Q14566 821 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms