RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 ZKSCAN5Q9Y2L8 839 aa4.98□□□□□ -1.61
USP48-215ENST00000534705 POLA1P09884 1462 aaPredicted RBP4.98□□□□□ -1.61
USP48-215ENST00000534705 SYNJ1O43426 1573 aa4.98□□□□□ -1.61
USP48-215ENST00000534705 TOP2BQ02880 1626 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 IFT140Q96RY7 1462 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 PRAMEF22A3QJZ6 481 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 KPNA6O60684 536 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 KRT37O76014 449 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 APEX1P27695 318 aaKnown RBP4.97□□□□□ -1.61
USP48-215ENST00000534705 RPS19P39019 145 aaKnown RBP4.97□□□□□ -1.61
USP48-215ENST00000534705 NEK4P51957 841 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 OCRLQ01968 901 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 ROM1Q03395 351 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 ADCY1Q08828 1119 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 CSRP2Q16527 193 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 ZMAT1Q5H9K5 638 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 FNDC7Q5VTL7 733 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 DHX37Q8IY37 1157 aaKnown RBP4.97□□□□□ -1.61
USP48-215ENST00000534705 ZZZ3Q8IYH5 903 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 WDR48Q8TAF3 677 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 C16orf92Q96LL3 132 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 ZDHHC5Q9C0B5 715 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 SLKQ9H2G2 1235 aaPredicted RBP4.97□□□□□ -1.61
USP48-215ENST00000534705 UCKL1Q9NWZ5 548 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 ABCA5Q8WWZ7 1642 aa4.97□□□□□ -1.61
USP48-215ENST00000534705 FGD5Q6ZNL6 1462 aa4.96□□□□□ -1.62
USP48-215ENST00000534705 A0A087X0B3 334 aa4.96□□□□□ -1.62
USP48-215ENST00000534705 PRLP01236 227 aa4.96□□□□□ -1.62
USP48-215ENST00000534705 ATP2A2P16615 1042 aaKnown RBP4.96□□□□□ -1.62
USP48-215ENST00000534705 MAP3K12Q12852 859 aa4.96□□□□□ -1.62
USP48-215ENST00000534705 EIF4HQ15056 248 aaKnown RBP4.96□□□□□ -1.62
USP48-215ENST00000534705 C21orf62-AS1Q17RA5 79 aa4.96□□□□□ -1.62
USP48-215ENST00000534705 GPR158Q5T848 1215 aa4.96□□□□□ -1.62
USP48-215ENST00000534705 CNNM4Q6P4Q7 775 aa4.96□□□□□ -1.62
USP48-215ENST00000534705 LRSAM1Q6UWE0 723 aa4.96□□□□□ -1.62
USP48-215ENST00000534705 ULK2Q8IYT8 1036 aa4.96□□□□□ -1.62
USP48-215ENST00000534705 SMC1BQ8NDV3 1235 aa4.96□□□□□ -1.62
USP48-215ENST00000534705 OR2W6PQ8NHA6 318 aa4.96□□□□□ -1.62
USP48-215ENST00000534705 MAML3Q96JK9 1138 aa4.96□□□□□ -1.62
USP48-215ENST00000534705 OXSMQ9NWU1 459 aa4.96□□□□□ -1.62
USP48-215ENST00000534705 RAD54L2Q9Y4B4 1467 aa4.95□□□□□ -1.62
USP48-215ENST00000534705 A0A0G2JNJ9 132 aa4.95□□□□□ -1.62
USP48-215ENST00000534705 UBA6A0AVT1 1052 aaPredicted RBP4.95□□□□□ -1.62
USP48-215ENST00000534705 PDE8AO60658 829 aa4.95□□□□□ -1.62
USP48-215ENST00000534705 CDC14BO60729 498 aa4.95□□□□□ -1.62
USP48-215ENST00000534705 LSSP48449 732 aa4.95□□□□□ -1.62
USP48-215ENST00000534705 GYS2P54840 703 aa4.95□□□□□ -1.62
USP48-215ENST00000534705 PHC1P78364 1004 aa4.95□□□□□ -1.62
USP48-215ENST00000534705 DHCR24Q15392 516 aa4.95□□□□□ -1.62
USP48-215ENST00000534705 SEPT7Q16181 437 aaKnown RBP4.95□□□□□ -1.62
USP48-215ENST00000534705 TTC38Q5R3I4 469 aa4.95□□□□□ -1.62
USP48-215ENST00000534705 GRAMD4Q6IC98 578 aa4.95□□□□□ -1.62
USP48-215ENST00000534705 ESRP1Q6NXG1 681 aaKnown RBP4.95□□□□□ -1.62
USP48-215ENST00000534705 PASD1Q8IV76 773 aa4.95□□□□□ -1.62
USP48-215ENST00000534705 OR14A2Q96R54 314 aa4.95□□□□□ -1.62
USP48-215ENST00000534705 IFT57Q9NWB7 429 aa4.95□□□□□ -1.62
USP48-215ENST00000534705 USP36Q9P275 1121 aaKnown RBP4.95□□□□□ -1.62
USP48-215ENST00000534705 Q9UFV3 132 aa4.95□□□□□ -1.62
USP48-215ENST00000534705 TMEM191CA6NGB0 347 aa4.94□□□□□ -1.62
USP48-215ENST00000534705 ZNF891A8MT65 544 aaPredicted RBP4.94□□□□□ -1.62
USP48-215ENST00000534705 CLSTN1O94985 981 aa4.94□□□□□ -1.62
USP48-215ENST00000534705 PEX11BO96011 259 aa4.94□□□□□ -1.62
USP48-215ENST00000534705 HMGCRP04035 888 aa4.94□□□□□ -1.62
USP48-215ENST00000534705 ZNF888P0CJ79 500 aaPredicted RBP4.94□□□□□ -1.62
USP48-215ENST00000534705 FBLP22087 321 aaKnown RBP4.94□□□□□ -1.62
USP48-215ENST00000534705 CD40P25942 277 aa4.94□□□□□ -1.62
USP48-215ENST00000534705 HIBADHP31937 336 aaKnown RBP4.94□□□□□ -1.62
USP48-215ENST00000534705 CD83Q01151 205 aa4.94□□□□□ -1.62
USP48-215ENST00000534705 NFYCQ13952 458 aa4.94□□□□□ -1.62
USP48-215ENST00000534705 LRRC32Q14392 662 aa4.94□□□□□ -1.62
USP48-215ENST00000534705 PCBP1Q15365 356 aaKnown RBP eCLIP4.94□□□□□ -1.62
USP48-215ENST00000534705 TRIM68Q6AZZ1 485 aa4.94□□□□□ -1.62
USP48-215ENST00000534705 PCSK4Q6UW60 755 aa4.94□□□□□ -1.62
USP48-215ENST00000534705 OTOP2Q7RTS6 562 aa4.94□□□□□ -1.62
USP48-215ENST00000534705 RNF180Q86T96 592 aa4.94□□□□□ -1.62
USP48-215ENST00000534705 THNSL2Q86YJ6 484 aa4.94□□□□□ -1.62
USP48-215ENST00000534705 PHYKPLQ8IUZ5 450 aa4.94□□□□□ -1.62
USP48-215ENST00000534705 ELF4Q99607 663 aaPredicted RBP4.94□□□□□ -1.62
USP48-215ENST00000534705 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.94□□□□□ -1.62
USP48-215ENST00000534705 VWA7Q9Y334 891 aa4.94□□□□□ -1.62
USP48-215ENST00000534705 IGSF3O75054 1194 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 MYCLP1P12525 358 aaPredicted RBP4.93□□□□□ -1.62
USP48-215ENST00000534705 SLC9A1P19634 815 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 PTX3P26022 381 aaPredicted RBP4.93□□□□□ -1.62
USP48-215ENST00000534705 STAT3P40763 770 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 SCNN1BP51168 640 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 KPNA1P52294 538 aaPredicted RBP4.93□□□□□ -1.62
USP48-215ENST00000534705 BCAR1P56945 870 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 SLC6A3Q01959 620 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 HHEXQ03014 270 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 MOGSQ13724 837 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 SART3Q15020 963 aaKnown RBP4.93□□□□□ -1.62
USP48-215ENST00000534705 CCDC142Q17RM4 750 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 RNF151Q2KHN1 245 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 SLFN12LQ6IEE8 588 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 ZNF627Q7L945 461 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 KANSL1Q7Z3B3 1105 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 ZNF808Q8N4W9 903 aaPredicted RBP4.93□□□□□ -1.62
USP48-215ENST00000534705 C7orf31Q8N865 590 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 CHTF18Q8WVB6 975 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms