RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	RCAN3	Q9UKA8	241 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	APOBEC2	Q9Y235	224 aa	Known RBP	3.93	□□□□□ -1.78
CD44-238	ENST00000534296	PRKAB1	Q9Y478	270 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	CTDP1	Q9Y5B0	961 aa	Predicted RBP	3.93	□□□□□ -1.78
CD44-238	ENST00000534296	PCDHB6	Q9Y5E3	794 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	RBM8A	Q9Y5S9	174 aa	Known RBP	3.93	□□□□□ -1.78
CD44-238	ENST00000534296		A0A0A6YYJ9	748 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	C1QTNF3-AMACR	E9PGA6	284 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	KDM1A	O60341	852 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	OPHN1	O60890	802 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	PCDH8	O95206	1070 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	JUN	P05412	331 aa	Known RBP	3.92	□□□□□ -1.78
CD44-238	ENST00000534296	INSRR	P14616	1297 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	CNGA1	P29973	690 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	GPR15	P49685	360 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	BPIFB4	P59827	614 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	SMAD3	P84022	425 aa	Known RBP	3.92	□□□□□ -1.78
CD44-238	ENST00000534296	PUM1	Q14671	1186 aa	Known RBP eCLIP	3.92	□□□□□ -1.78
CD44-238	ENST00000534296	GRM7	Q14831	915 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	SEPT7	Q16181	437 aa	Known RBP	3.92	□□□□□ -1.78
CD44-238	ENST00000534296	LMBR1L	Q6UX01	489 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	KANSL1	Q7Z3B3	1105 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	PALM2	Q8IXS6	379 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	FUK	Q8N0W3	1084 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296		Q8TCH9	128 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	RSAD2	Q8WXG1	361 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	SLC5A5	Q92911	643 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	ARL8A	Q96BM9	186 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	UIMC1	Q96RL1	719 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	MPHOSPH9	Q99550	1183 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	OSBPL6	Q9BZF3	934 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	PITHD1	Q9GZP4	211 aa	Predicted RBP	3.92	□□□□□ -1.78
CD44-238	ENST00000534296	CD248	Q9HCU0	757 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	SPTLC3	Q9NUV7	552 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	DNAI1	Q9UI46	699 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296	NOC2L	Q9Y3T9	749 aa	Known RBP	3.92	□□□□□ -1.78
CD44-238	ENST00000534296	TESMIN	Q9Y4I5	508 aa		3.92	□□□□□ -1.78
CD44-238	ENST00000534296		A0A087X0B3	334 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	3.91	□□□□□ -1.78
CD44-238	ENST00000534296	FOXS1	O43638	330 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	BRINP1	O60477	761 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	VSIG10L2	P0DP72	767 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	ACO1	P21399	889 aa	Known RBP	3.91	□□□□□ -1.78
CD44-238	ENST00000534296	MSX2	P35548	267 aa	Predicted RBP	3.91	□□□□□ -1.78
CD44-238	ENST00000534296	ADCYAP1R1	P41586	468 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	SESN3	P58005	492 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	ATP2C1	P98194	919 aa	Predicted RBP	3.91	□□□□□ -1.78
CD44-238	ENST00000534296	NFKB2	Q00653	900 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	HGFAC	Q04756	655 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	FAP	Q12884	760 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	RIN1	Q13671	783 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	TERF2	Q15554	542 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	TBR1	Q16650	682 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	GIMAP6	Q6P9H5	292 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	3.91	□□□□□ -1.78
CD44-238	ENST00000534296	GLB1L2	Q8IW92	636 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	ANKRD35	Q8N283	1001 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	D2HGDH	Q8N465	521 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	ANKRD53	Q8N9V6	530 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	PLA2G15	Q8NCC3	412 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	3.91	□□□□□ -1.78
CD44-238	ENST00000534296	CFHR4	Q92496	578 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	EDA	Q92838	391 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	PAWR	Q96IZ0	340 aa	Known RBP	3.91	□□□□□ -1.78
CD44-238	ENST00000534296	EMC7	Q9NPA0	242 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	3.91	□□□□□ -1.78
CD44-238	ENST00000534296	PLA2G3	Q9NZ20	509 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	MAGEL2	Q9UJ55	1249 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	MYPN	Q86TC9	1320 aa		3.91	□□□□□ -1.78
CD44-238	ENST00000534296	CAPN14	A8MX76	684 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	STAT3	P40763	770 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	ADCY7	P51828	1080 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	NPEPPS	P55786	919 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	STRN3	Q13033	797 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	CRHR2	Q13324	411 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	GJC2	Q5T442	439 aa	Predicted RBP	3.9	□□□□□ -1.79
CD44-238	ENST00000534296	LCE5A	Q5TCM9	118 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	BROX	Q5VW32	411 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	MFSD5	Q6N075	450 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	USP51	Q70EK9	711 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	SGMS1	Q86VZ5	419 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	RASSF3	Q86WH2	238 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	CXorf67	Q86X51	503 aa	Predicted RBP	3.9	□□□□□ -1.79
CD44-238	ENST00000534296	BCL6B	Q8N143	479 aa	Predicted RBP	3.9	□□□□□ -1.79
CD44-238	ENST00000534296	NKD2	Q969F2	451 aa	Predicted RBP	3.9	□□□□□ -1.79
CD44-238	ENST00000534296	TMEM176A	Q96HP8	235 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	RPL10L	Q96L21	214 aa	Known RBP	3.9	□□□□□ -1.79
CD44-238	ENST00000534296	TCF25	Q9BQ70	676 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	HAPLN2	Q9GZV7	340 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	NCDN	Q9UBB6	729 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	USP18	Q9UMW8	372 aa		3.9	□□□□□ -1.79
CD44-238	ENST00000534296	FAM83G	A6ND36	823 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	MATN2	O00339	956 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	MTSS1	O43312	755 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	TGM5	O43548	720 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	IPO13	O94829	963 aa	Known RBP	3.89	□□□□□ -1.79
CD44-238	ENST00000534296	TOX4	O94842	621 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	BPI	P17213	487 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	KIR2DL3	P43628	341 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	ANTXR2	P58335	489 aa		3.89	□□□□□ -1.79

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