RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 CABP7Q86V35 215 aa22.07■■□□□ 1.12
CPSF1-209ENST00000532725 RNF149Q8NC42 400 aa22.07■■□□□ 1.12
CPSF1-209ENST00000532725 MCPH1Q8NEM0 835 aa22.07■■□□□ 1.12
CPSF1-209ENST00000532725 FAM161BQ96MY7 647 aa22.07■■□□□ 1.12
CPSF1-209ENST00000532725 NT5C3AQ9H0P0 336 aa22.07■■□□□ 1.12
CPSF1-209ENST00000532725 GPRC5CQ9NQ84 441 aa22.07■■□□□ 1.12
CPSF1-209ENST00000532725 TFIP11Q9UBB9 837 aaKnown RBP22.07■■□□□ 1.12
CPSF1-209ENST00000532725 ARID2Q68CP9 1835 aa22.06■■□□□ 1.12
CPSF1-209ENST00000532725 LCHNA4D1U4 455 aa22.06■■□□□ 1.12
CPSF1-209ENST00000532725 ARHGEF15O94989 841 aa22.06■■□□□ 1.12
CPSF1-209ENST00000532725 UBA7P41226 1012 aa22.06■■□□□ 1.12
CPSF1-209ENST00000532725 ZRSR1Q15695 479 aaKnown RBP22.06■■□□□ 1.12
CPSF1-209ENST00000532725 TMEM119Q4V9L6 283 aa22.06■■□□□ 1.12
CPSF1-209ENST00000532725 LINC00301Q8NCQ3 95 aa22.06■■□□□ 1.12
CPSF1-209ENST00000532725 ZNF396Q96N95 335 aaPredicted RBP22.06■■□□□ 1.12
CPSF1-209ENST00000532725 PLIN2Q99541 437 aa22.06■■□□□ 1.12
CPSF1-209ENST00000532725 CSRNP2Q9H175 543 aa22.06■■□□□ 1.12
CPSF1-209ENST00000532725 POLR3FQ9H1D9 316 aaPredicted RBP22.06■■□□□ 1.12
CPSF1-209ENST00000532725 MINDY3Q9H8M7 445 aa22.06■■□□□ 1.12
CPSF1-209ENST00000532725 ZDHHC9Q9Y397 364 aa22.06■■□□□ 1.12
CPSF1-209ENST00000532725 GBF1Q92538 1859 aa22.05■■□□□ 1.12
CPSF1-209ENST00000532725 DENND3A2RUS2 1198 aa22.05■■□□□ 1.12
CPSF1-209ENST00000532725 C9IYK1 514 aa22.05■■□□□ 1.12
CPSF1-209ENST00000532725 PTENP60484 403 aa22.05■■□□□ 1.12
CPSF1-209ENST00000532725 TAP1Q03518 808 aa22.05■■□□□ 1.12
CPSF1-209ENST00000532725 GRIN2CQ14957 1233 aa22.05■■□□□ 1.12
CPSF1-209ENST00000532725 FAM102BQ5T8I3 360 aa22.05■■□□□ 1.12
CPSF1-209ENST00000532725 SLC24A5Q71RS6 500 aa22.05■■□□□ 1.12
CPSF1-209ENST00000532725 IFNLR1Q8IU57 520 aaPredicted RBP22.05■■□□□ 1.12
CPSF1-209ENST00000532725 CLIC6Q96NY7 704 aa22.05■■□□□ 1.12
CPSF1-209ENST00000532725 CCSER1Q9C0I3 900 aa22.05■■□□□ 1.12
CPSF1-209ENST00000532725 CHST12Q9NRB3 414 aa22.05■■□□□ 1.12
CPSF1-209ENST00000532725 C1orf112Q9NSG2 853 aa22.05■■□□□ 1.12
CPSF1-209ENST00000532725 BRD1O95696 1058 aa22.04■■□□□ 1.12
CPSF1-209ENST00000532725 ZSCAN20P17040 1043 aaPredicted RBP22.04■■□□□ 1.12
CPSF1-209ENST00000532725 SFPQP23246 707 aaKnown RBP eCLIP22.04■■□□□ 1.12
CPSF1-209ENST00000532725 SARSP49591 514 aaKnown RBP22.04■■□□□ 1.12
CPSF1-209ENST00000532725 CAPSQ13938 189 aa22.04■■□□□ 1.12
CPSF1-209ENST00000532725 TFDP1Q14186 410 aa22.04■■□□□ 1.12
CPSF1-209ENST00000532725 SPECC1Q5M775 1068 aa22.04■■□□□ 1.12
CPSF1-209ENST00000532725 PPP2R2DQ66LE6 453 aa22.04■■□□□ 1.12
CPSF1-209ENST00000532725 RINT1Q6NUQ1 792 aa22.04■■□□□ 1.12
CPSF1-209ENST00000532725 C1orf186Q6ZWK4 172 aa22.04■■□□□ 1.12
CPSF1-209ENST00000532725 USP49Q70CQ1 688 aa22.04■■□□□ 1.12
CPSF1-209ENST00000532725 SP7Q8TDD2 431 aaPredicted RBP22.04■■□□□ 1.12
CPSF1-209ENST00000532725 EPSTI1Q96J88 318 aa22.04■■□□□ 1.12
CPSF1-209ENST00000532725 GUCD1Q96NT3 240 aa22.04■■□□□ 1.12
CPSF1-209ENST00000532725 POLD4Q9HCU8 107 aa22.04■■□□□ 1.12
CPSF1-209ENST00000532725 MYO9BQ13459 2157 aa22.04■■□□□ 1.12
CPSF1-209ENST00000532725 DGKIO75912 1065 aa22.03■■□□□ 1.12
CPSF1-209ENST00000532725 NPAS4Q8IUM7 802 aa22.03■■□□□ 1.12
CPSF1-209ENST00000532725 SYT2Q8N9I0 419 aaPredicted RBP22.03■■□□□ 1.12
CPSF1-209ENST00000532725 LRRC15Q8TF66 581 aa22.03■■□□□ 1.12
CPSF1-209ENST00000532725 ZNF689Q96CS4 500 aaPredicted RBP22.03■■□□□ 1.12
CPSF1-209ENST00000532725 CALML4Q96GE6 196 aa22.03■■□□□ 1.12
CPSF1-209ENST00000532725 CDK5RAP3Q96JB5 506 aa22.03■■□□□ 1.12
CPSF1-209ENST00000532725 NFKBIZQ9BYH8 718 aa22.03■■□□□ 1.12
CPSF1-209ENST00000532725 RC3H2Q9HBD1 1191 aaKnown RBP22.03■■□□□ 1.12
CPSF1-209ENST00000532725 STAG3L1P0CL83 205 aa22.02■■□□□ 1.12
CPSF1-209ENST00000532725 HOXA11P31270 313 aaPredicted RBP22.02■■□□□ 1.12
CPSF1-209ENST00000532725 PHKA2P46019 1235 aa22.02■■□□□ 1.12
CPSF1-209ENST00000532725 KARSQ15046 597 aaKnown RBP22.02■■□□□ 1.12
CPSF1-209ENST00000532725 STK38Q15208 465 aa22.02■■□□□ 1.12
CPSF1-209ENST00000532725 FOXD4L6Q3SYB3 417 aaPredicted RBP22.02■■□□□ 1.12
CPSF1-209ENST00000532725 ATL3Q6DD88 541 aa22.02■■□□□ 1.12
CPSF1-209ENST00000532725 FOXD4L3Q6VB84 417 aaPredicted RBP22.02■■□□□ 1.12
CPSF1-209ENST00000532725 CATSPER4Q7RTX7 472 aa22.02■■□□□ 1.12
CPSF1-209ENST00000532725 KRI1Q8N9T8 703 aaKnown RBP22.02■■□□□ 1.12
CPSF1-209ENST00000532725 BSNDQ8WZ55 320 aa22.02■■□□□ 1.12
CPSF1-209ENST00000532725 YME1L1Q96TA2 773 aa22.02■■□□□ 1.12
CPSF1-209ENST00000532725 CDX2Q99626 313 aaPredicted RBP22.02■■□□□ 1.12
CPSF1-209ENST00000532725 RUSC1Q9BVN2 902 aa22.02■■□□□ 1.12
CPSF1-209ENST00000532725 PCDHB7Q9Y5E2 793 aa22.02■■□□□ 1.12
CPSF1-209ENST00000532725 CHD7Q9P2D1 2997 aa22.02■■□□□ 1.11
CPSF1-209ENST00000532725 A0A0U1RQF3 1178 aa22.01■■□□□ 1.11
CPSF1-209ENST00000532725 LINC01553A4QN01 128 aa22.01■■□□□ 1.11
CPSF1-209ENST00000532725 SPTLC2O15270 562 aa22.01■■□□□ 1.11
CPSF1-209ENST00000532725 PPP6R2O75170 966 aa22.01■■□□□ 1.11
CPSF1-209ENST00000532725 YEATS4O95619 227 aa22.01■■□□□ 1.11
CPSF1-209ENST00000532725 PLA2G4BP0C869 781 aa22.01■■□□□ 1.11
CPSF1-209ENST00000532725 SLC12A3P55017 1021 aa22.01■■□□□ 1.11
CPSF1-209ENST00000532725 PCBP1Q15365 356 aaKnown RBP eCLIP22.01■■□□□ 1.11
CPSF1-209ENST00000532725 SPRED2Q7Z698 418 aa22.01■■□□□ 1.11
CPSF1-209ENST00000532725 SYMPKQ92797 1274 aaKnown RBP22.01■■□□□ 1.11
CPSF1-209ENST00000532725 KIFAP3Q92845 792 aa22.01■■□□□ 1.11
CPSF1-209ENST00000532725 TRAIPQ9BWF2 469 aa22.01■■□□□ 1.11
CPSF1-209ENST00000532725 ELAC1Q9H777 363 aaKnown RBP22.01■■□□□ 1.11
CPSF1-209ENST00000532725 BLOC1S4Q9NUP1 217 aa22.01■■□□□ 1.11
CPSF1-209ENST00000532725 DAXXQ9UER7 740 aaPredicted RBP22.01■■□□□ 1.11
CPSF1-209ENST00000532725 MBTD1Q05BQ5 628 aa22■■□□□ 1.11
CPSF1-209ENST00000532725 AGPAT5Q9NUQ2 364 aa22■■□□□ 1.11
CPSF1-209ENST00000532725 RNF216Q9NWF9 866 aaPredicted RBP22■■□□□ 1.11
CPSF1-209ENST00000532725 TMEM161AQ9NX61 479 aa22■■□□□ 1.11
CPSF1-209ENST00000532725 DACT1Q9NYF0 836 aa22■■□□□ 1.11
CPSF1-209ENST00000532725 LRFN2Q9ULH4 789 aa22■■□□□ 1.11
CPSF1-209ENST00000532725 CDH23Q9H251 3354 aa21.99■■□□□ 1.11
CPSF1-209ENST00000532725 SLC34A2O95436 690 aa21.99■■□□□ 1.11
CPSF1-209ENST00000532725 PLCG1P19174 1290 aa21.99■■□□□ 1.11
CPSF1-209ENST00000532725 ERVK-21P61565 698 aa21.99■■□□□ 1.11
CPSF1-209ENST00000532725 DNM1Q05193 864 aaKnown RBP21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms