RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 ANKRD1Q15327 319 aa17.71■□□□□ 0.43
CPSF1-205ENST00000531042 CLLU1OSQ5K130 101 aa17.71■□□□□ 0.43
CPSF1-205ENST00000531042 KCNT2Q6UVM3 1135 aa17.71■□□□□ 0.43
CPSF1-205ENST00000531042 PIK3AP1Q6ZUJ8 805 aa17.71■□□□□ 0.43
CPSF1-205ENST00000531042 ZNF410Q86VK4 478 aa17.71■□□□□ 0.43
CPSF1-205ENST00000531042 LRRC43Q8N309 656 aa17.71■□□□□ 0.43
CPSF1-205ENST00000531042 RNF169Q8NCN4 708 aa17.71■□□□□ 0.43
CPSF1-205ENST00000531042 SMRP1Q8NCR6 262 aa17.71■□□□□ 0.43
CPSF1-205ENST00000531042 MRPS27Q92552 414 aaKnown RBP17.71■□□□□ 0.43
CPSF1-205ENST00000531042 HAS1Q92839 578 aa17.71■□□□□ 0.43
CPSF1-205ENST00000531042 CHST12Q9NRB3 414 aa17.71■□□□□ 0.43
CPSF1-205ENST00000531042 PPP4R2Q9NY27 417 aa17.71■□□□□ 0.43
CPSF1-205ENST00000531042 ORC3Q9UBD5 711 aaPredicted RBP17.71■□□□□ 0.43
CPSF1-205ENST00000531042 BARX2Q9UMQ3 279 aaPredicted RBP17.71■□□□□ 0.43
CPSF1-205ENST00000531042 PRR33A8MZF0 331 aa17.7■□□□□ 0.42
CPSF1-205ENST00000531042 TBX3O15119 743 aa17.7■□□□□ 0.42
CPSF1-205ENST00000531042 CCNT1O60563 726 aaKnown RBP17.7■□□□□ 0.42
CPSF1-205ENST00000531042 ATF7P17544 494 aaPredicted RBP17.7■□□□□ 0.42
CPSF1-205ENST00000531042 PLA2G4FQ68DD2 849 aa17.7■□□□□ 0.42
CPSF1-205ENST00000531042 RHPN2Q8IUC4 686 aa17.7■□□□□ 0.42
CPSF1-205ENST00000531042 HELQQ8TDG4 1101 aa17.7■□□□□ 0.42
CPSF1-205ENST00000531042 WASF1Q92558 559 aa17.7■□□□□ 0.42
CPSF1-205ENST00000531042 ZNF558Q96NG5 402 aa17.7■□□□□ 0.42
CPSF1-205ENST00000531042 CDCA3Q99618 268 aaPredicted RBP17.7■□□□□ 0.42
CPSF1-205ENST00000531042 NAP1L4Q99733 375 aaKnown RBP17.7■□□□□ 0.42
CPSF1-205ENST00000531042 JPH2Q9BR39 696 aaPredicted RBP17.7■□□□□ 0.42
CPSF1-205ENST00000531042 INO80BQ9C086 356 aaPredicted RBP17.7■□□□□ 0.42
CPSF1-205ENST00000531042 CYP26B1Q9NR63 512 aa17.7■□□□□ 0.42
CPSF1-205ENST00000531042 PUF60Q9UHX1 559 aaKnown RBP17.7■□□□□ 0.42
CPSF1-205ENST00000531042 HCN4Q9Y3Q4 1203 aa17.7■□□□□ 0.42
CPSF1-205ENST00000531042 TRIOO75962 3097 aa17.69■□□□□ 0.42
CPSF1-205ENST00000531042 FSD2A1L4K1 749 aa17.69■□□□□ 0.42
CPSF1-205ENST00000531042 DKC1O60832 514 aaKnown RBP eCLIP17.69■□□□□ 0.42
CPSF1-205ENST00000531042 P4HBP07237 508 aaKnown RBP17.69■□□□□ 0.42
CPSF1-205ENST00000531042 FDPSP14324 419 aaKnown RBP17.69■□□□□ 0.42
CPSF1-205ENST00000531042 SFPQP23246 707 aaKnown RBP eCLIP17.69■□□□□ 0.42
CPSF1-205ENST00000531042 PPM1AP35813 382 aa17.69■□□□□ 0.42
CPSF1-205ENST00000531042 PLA2G5P39877 138 aa17.69■□□□□ 0.42
CPSF1-205ENST00000531042 PBX3P40426 434 aa17.69■□□□□ 0.42
CPSF1-205ENST00000531042 NPEPPSP55786 919 aa17.69■□□□□ 0.42
CPSF1-205ENST00000531042 DUSP6Q16828 381 aa17.69■□□□□ 0.42
CPSF1-205ENST00000531042 EARS2Q5JPH6 523 aaKnown RBP17.69■□□□□ 0.42
CPSF1-205ENST00000531042 KSR1Q8IVT5 923 aa17.69■□□□□ 0.42
CPSF1-205ENST00000531042 VN1R2Q8NFZ6 395 aa17.69■□□□□ 0.42
CPSF1-205ENST00000531042 TRAIPQ9BWF2 469 aa17.69■□□□□ 0.42
CPSF1-205ENST00000531042 WRAP73Q9P2S5 460 aaPredicted RBP17.69■□□□□ 0.42
CPSF1-205ENST00000531042 ARIH1Q9Y4X5 557 aaPredicted RBP17.69■□□□□ 0.42
CPSF1-205ENST00000531042 PHKA2P46019 1235 aa17.68■□□□□ 0.42
CPSF1-205ENST00000531042 RBM10P98175 930 aaKnown RBP17.68■□□□□ 0.42
CPSF1-205ENST00000531042 KRT17Q04695 432 aa17.68■□□□□ 0.42
CPSF1-205ENST00000531042 EPHA7Q15375 998 aa17.68■□□□□ 0.42
CPSF1-205ENST00000531042 ME3Q16798 604 aa17.68■□□□□ 0.42
CPSF1-205ENST00000531042 PLPP4Q5VZY2 271 aa17.68■□□□□ 0.42
CPSF1-205ENST00000531042 POTEDQ86YR6 584 aa17.68■□□□□ 0.42
CPSF1-205ENST00000531042 NECAB1Q8N987 351 aa17.68■□□□□ 0.42
CPSF1-205ENST00000531042 ZNF579Q8NAF0 562 aaKnown RBP17.68■□□□□ 0.42
CPSF1-205ENST00000531042 FAM122AQ96E09 287 aa17.68■□□□□ 0.42
CPSF1-205ENST00000531042 TCF25Q9BQ70 676 aa17.68■□□□□ 0.42
CPSF1-205ENST00000531042 SPG21Q9NZD8 308 aa17.68■□□□□ 0.42
CPSF1-205ENST00000531042 PPME1Q9Y570 386 aa17.68■□□□□ 0.42
CPSF1-205ENST00000531042 FAM205CA6NFA0 338 aa17.67■□□□□ 0.42
CPSF1-205ENST00000531042 MARCH6O60337 910 aa17.67■□□□□ 0.42
CPSF1-205ENST00000531042 KRT2P35908 639 aa17.67■□□□□ 0.42
CPSF1-205ENST00000531042 NR5A1Q13285 461 aa17.67■□□□□ 0.42
CPSF1-205ENST00000531042 KCNC3Q14003 757 aa17.67■□□□□ 0.42
CPSF1-205ENST00000531042 TWF2Q6IBS0 349 aaKnown RBP17.67■□□□□ 0.42
CPSF1-205ENST00000531042 C4orf19Q8IY42 314 aa17.67■□□□□ 0.42
CPSF1-205ENST00000531042 EXOC8Q8IYI6 725 aa17.67■□□□□ 0.42
CPSF1-205ENST00000531042 SLC7A3Q8WY07 619 aa17.67■□□□□ 0.42
CPSF1-205ENST00000531042 TNFRSF25Q93038 417 aa17.67■□□□□ 0.42
CPSF1-205ENST00000531042 GTF3C6Q969F1 213 aa17.67■□□□□ 0.42
CPSF1-205ENST00000531042 CEP170P1Q96L14 293 aa17.67■□□□□ 0.42
CPSF1-205ENST00000531042 NLRP4Q96MN2 994 aa17.67■□□□□ 0.42
CPSF1-205ENST00000531042 MRPL9Q9BYD2 267 aaKnown RBP17.67■□□□□ 0.42
CPSF1-205ENST00000531042 DHX33Q9H6R0 707 aaKnown RBP17.67■□□□□ 0.42
CPSF1-205ENST00000531042 IFT122Q9HBG6 1241 aa17.67■□□□□ 0.42
CPSF1-205ENST00000531042 NGRNQ9NPE2 291 aaKnown RBP17.67■□□□□ 0.42
CPSF1-205ENST00000531042 ENTPD7Q9NQZ7 604 aa17.67■□□□□ 0.42
CPSF1-205ENST00000531042 PIN4Q9Y237 131 aaKnown RBP17.67■□□□□ 0.42
CPSF1-205ENST00000531042 USP15Q9Y4E8 981 aaPredicted RBP17.67■□□□□ 0.42
CPSF1-205ENST00000531042 HIDE1A8MVS5 230 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 BAG4O95429 457 aaKnown RBP17.66■□□□□ 0.42
CPSF1-205ENST00000531042 LARGE1O95461 756 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 SKIP12755 728 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 RFC5P40937 340 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 SPIRE1Q08AE8 756 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 ERICH6BQ5W0A0 696 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 NCAPH2Q6IBW4 605 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 TMEM184AQ6ZMB5 413 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 CATSPER4Q7RTX7 472 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 TMC7Q7Z402 723 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 RNF135Q8IUD6 432 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 SLFN12Q8IYM2 578 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 SLC39A11Q8N1S5 342 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 PRPF31Q8WWY3 499 aaKnown RBP17.66■□□□□ 0.42
CPSF1-205ENST00000531042 RSPH1Q8WYR4 309 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 LXNQ9BS40 222 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 BRMS1Q9HCU9 246 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 FAM105AQ9NUU6 356 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 RGL1Q9NZL6 768 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms