RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 RFX1P22670 979 aa11.91□□□□□ -0.5
CPSF1-203ENST00000527916 CRYBB1P53674 252 aaPredicted RBP11.91□□□□□ -0.5
CPSF1-203ENST00000527916 ACTR2P61160 394 aa11.91□□□□□ -0.5
CPSF1-203ENST00000527916 AKAP17AQ02040 695 aaKnown RBP11.91□□□□□ -0.5
CPSF1-203ENST00000527916 TOB2Q14106 344 aaPredicted RBP11.91□□□□□ -0.5
CPSF1-203ENST00000527916 ZC3H14Q6PJT7 736 aaKnown RBP11.91□□□□□ -0.5
CPSF1-203ENST00000527916 OTOP3Q7RTS5 596 aa11.91□□□□□ -0.5
CPSF1-203ENST00000527916 KIAA2013Q8IYS2 634 aa11.91□□□□□ -0.5
CPSF1-203ENST00000527916 KIAA0319LQ8IZA0 1049 aa11.91□□□□□ -0.5
CPSF1-203ENST00000527916 FAM177A1Q8N128 213 aaPredicted RBP11.91□□□□□ -0.5
CPSF1-203ENST00000527916 BICD2Q8TD16 824 aa11.91□□□□□ -0.5
CPSF1-203ENST00000527916 MYH9P35579 1960 aaKnown RBP11.9□□□□□ -0.5
CPSF1-203ENST00000527916 IGLV3-22A0A075B6J6 115 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 IGKV6D-21A0A0A0MT36 114 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 HBP1O60381 514 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 ZSCAN20P17040 1043 aaPredicted RBP11.9□□□□□ -0.5
CPSF1-203ENST00000527916 NPR3P17342 541 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 CIITAP33076 1130 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 ZNF76P36508 570 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 PBX3P40426 434 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 ALDH7A1P49419 539 aaKnown RBP11.9□□□□□ -0.5
CPSF1-203ENST00000527916 ITGB3BPQ13352 177 aaPredicted RBP11.9□□□□□ -0.5
CPSF1-203ENST00000527916 GIT2Q14161 759 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 JAKMIP3Q5VZ66 844 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 LRRC55Q6ZSA7 311 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 SIX5Q8N196 739 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 REXO1Q8N1G1 1221 aaKnown RBP11.9□□□□□ -0.5
CPSF1-203ENST00000527916 C12orf76Q8N812 135 aaPredicted RBP11.9□□□□□ -0.5
CPSF1-203ENST00000527916 CCDC148Q8NFR7 591 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 TMEM40Q8WWA1 233 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 TMEM169Q96HH4 297 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 PGBD1Q96JS3 809 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 CASD1Q96PB1 797 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 CDHR5Q9HBB8 845 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 DUSP12Q9UNI6 340 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 COL1A2P08123 1366 aa11.9□□□□□ -0.5
CPSF1-203ENST00000527916 WDR81Q562E7 1941 aa11.9□□□□□ -0.51
CPSF1-203ENST00000527916 KMT2BQ9UMN6 2715 aaPredicted RBP11.89□□□□□ -0.51
CPSF1-203ENST00000527916 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.89□□□□□ -0.51
CPSF1-203ENST00000527916 CARNS1A5YM72 827 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 SPDYE4A6NLX3 237 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 FAM86B1E9PN63 330 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 BACH1O14867 736 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 DHX15O43143 795 aaKnown RBP11.89□□□□□ -0.51
CPSF1-203ENST00000527916 FAM86B2P0C5J1 330 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 KIZQ2M2Z5 673 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 ZNF484Q5JVG2 852 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 FAM160B1Q5W0V3 765 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 CCDC149Q6ZUS6 474 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 CABP7Q86V35 215 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 FAM228AQ86W67 206 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 PLA2G4DQ86XP0 818 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 SLC39A11Q8N1S5 342 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 PHKBQ93100 1093 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 OSMRQ99650 979 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 SLC26A6Q9BXS9 759 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 MRPL9Q9BYD2 267 aaKnown RBP11.89□□□□□ -0.51
CPSF1-203ENST00000527916 TBC1D22BQ9NU19 505 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 IGSF9Q9P2J2 1179 aa11.89□□□□□ -0.51
CPSF1-203ENST00000527916 IPO5O00410 1097 aaKnown RBP11.88□□□□□ -0.51
CPSF1-203ENST00000527916 EIF5BO60841 1220 aaKnown RBP11.88□□□□□ -0.51
CPSF1-203ENST00000527916 USP11P51784 963 aa11.88□□□□□ -0.51
CPSF1-203ENST00000527916 CCT2P78371 535 aaKnown RBP11.88□□□□□ -0.51
CPSF1-203ENST00000527916 SETQ01105 290 aaPredicted RBP11.88□□□□□ -0.51
CPSF1-203ENST00000527916 SSRP1Q08945 709 aaKnown RBP11.88□□□□□ -0.51
CPSF1-203ENST00000527916 DSC3Q14574 896 aa11.88□□□□□ -0.51
CPSF1-203ENST00000527916 NONOQ15233 471 aaKnown RBP eCLIP11.88□□□□□ -0.51
CPSF1-203ENST00000527916 ABHD15Q6UXT9 468 aa11.88□□□□□ -0.51
CPSF1-203ENST00000527916 TMC5Q6UXY8 1006 aa11.88□□□□□ -0.51
CPSF1-203ENST00000527916 PPFIBP1Q86W92 1011 aa11.88□□□□□ -0.51
CPSF1-203ENST00000527916 TRIM22Q8IYM9 498 aa11.88□□□□□ -0.51
CPSF1-203ENST00000527916 VPS52Q8N1B4 723 aa11.88□□□□□ -0.51
CPSF1-203ENST00000527916 ZNF710Q8N1W2 664 aa11.88□□□□□ -0.51
CPSF1-203ENST00000527916 METTL13Q8N6R0 699 aa11.88□□□□□ -0.51
CPSF1-203ENST00000527916 RNF169Q8NCN4 708 aa11.88□□□□□ -0.51
CPSF1-203ENST00000527916 RUBCNQ92622 972 aa11.88□□□□□ -0.51
CPSF1-203ENST00000527916 SFXN1Q9H9B4 322 aa11.88□□□□□ -0.51
CPSF1-203ENST00000527916 KCNK12Q9HB15 430 aa11.88□□□□□ -0.51
CPSF1-203ENST00000527916 ADAMTS3O15072 1205 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 DEXIO95424 95 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 CCNE2O96020 404 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 EPCAMP16422 314 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 SDHBP21912 280 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 POLGP54098 1239 aaPredicted RBP11.87□□□□□ -0.51
CPSF1-203ENST00000527916 BCAR1P56945 870 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 ANAPC15P60006 121 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 GALNT17Q6IS24 598 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 ZNF746Q6NUN9 644 aaPredicted RBP11.87□□□□□ -0.51
CPSF1-203ENST00000527916 MIS18BP1Q6P0N0 1132 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 PDXDC2PQ6P474 469 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 CPLX2Q6PUV4 134 aaKnown RBP11.87□□□□□ -0.51
CPSF1-203ENST00000527916 ECHDC2Q86YB7 292 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 SMAP1Q8IYB5 467 aaPredicted RBP11.87□□□□□ -0.51
CPSF1-203ENST00000527916 RSPH1Q8WYR4 309 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 PPP1R16BQ96T49 567 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 ZNF577Q9BSK1 485 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 C22orf23Q9BZE7 217 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 NCOA5Q9HCD5 579 aaKnown RBP11.87□□□□□ -0.51
CPSF1-203ENST00000527916 PDRG1Q9NUG6 133 aa11.87□□□□□ -0.51
CPSF1-203ENST00000527916 RNF19AQ9NV58 838 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms