RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 ZSCAN20P17040 1043 aaPredicted RBP11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 ATP2B1P20020 1258 aa11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 YWHABP31946 246 aaKnown RBP11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 TXKP42681 527 aa11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 RBM25P49756 843 aaKnown RBP11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 DNM2P50570 870 aa11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 TRIM29Q14134 588 aa11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 TPH2Q8IWU9 490 aa11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 COLGALT1Q8NBJ5 622 aa11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 PRPF31Q8WWY3 499 aaKnown RBP11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 LLPHQ9BRT6 129 aaKnown RBP11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 TMEM117Q9H0C3 514 aa11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 ZSWIM4Q9H7M6 989 aa11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 TTC12Q9H892 705 aaPredicted RBP11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 MINDY3Q9H8M7 445 aa11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 XPNPEP1Q9NQW7 623 aa11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 CLDND1Q9NY35 253 aa11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 PCDHA12Q9UN75 941 aa11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 PLXNA4Q9HCM2 1894 aa11.68□□□□□ -0.54
PRPF40B-204ENST00000527253 GRXCR2A6NFK2 248 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 MEIS3P2A8K0S8 358 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 NEMFO60524 1076 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 DKC1O60832 514 aaKnown RBP eCLIP11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 LYPLA2O95372 231 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 PBX3P40426 434 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 RFC5P40937 340 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 ERVFC1P60507 584 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 CDC42EP1Q00587 391 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 EMC2Q15006 297 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 XKR9Q5GH70 373 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 SPOUT1Q5T280 376 aaKnown RBP11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 PTCRAQ6ISU1 281 aaPredicted RBP11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 EP400NLQ6ZTU2 488 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 ZNF410Q86VK4 478 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 RNF169Q8NCN4 708 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 C8orf76Q96K31 380 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 ZSCAN31Q96LW9 406 aaPredicted RBP11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 NLRP4Q96MN2 994 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 IGFLR1Q9H665 355 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 CHST12Q9NRB3 414 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 COL4A3BPQ9Y5P4 624 aa11.67□□□□□ -0.54
PRPF40B-204ENST00000527253 POTEMA6NI47 508 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 FSCN2O14926 492 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 TBX10O75333 385 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 FGF18O76093 207 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 SRGAP2CP0DJJ0 459 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 SPATA31C1P0DKV0 1188 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 HOXA11P31270 313 aaPredicted RBP11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 MCM7P33993 719 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 PHKA2P46019 1235 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 POLGP54098 1239 aaPredicted RBP11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 LAMTOR4Q0VGL1 99 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 ADAM15Q13444 863 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 ZNF174Q15697 407 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 LONRF3Q496Y0 759 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 OTUD6AQ7L8S5 288 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 FAM178BQ8IXR5 827 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 FBXO18Q8NFZ0 1043 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 HELQQ8TDG4 1101 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 SLC7A3Q8WY07 619 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 LPPQ93052 612 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 JPH2Q9BR39 696 aaPredicted RBP11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 TRAIPQ9BWF2 469 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 EPHX3Q9H6B9 360 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 RNF216Q9NWF9 866 aaPredicted RBP11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 CLEC1BQ9P126 229 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 PPME1Q9Y570 386 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 PCDHB12Q9Y5F1 795 aa11.66□□□□□ -0.54
PRPF40B-204ENST00000527253 HOXA2O43364 376 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 NCK2O43639 380 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 MED24O75448 989 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 CD2BP2O95400 341 aaKnown RBP11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 EOMESO95936 686 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 LAG3P18627 525 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 SFPQP23246 707 aaKnown RBP eCLIP11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 RBM10P98175 930 aaKnown RBP11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 NBR1Q14596 966 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 CLUL1Q15846 466 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 UBXN11Q5T124 520 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 KCNT2Q6UVM3 1135 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 CATSPER4Q7RTX7 472 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 RBM23Q86U06 439 aaKnown RBP11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 FERMT3Q86UX7 667 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 THNSL1Q8IYQ7 743 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 C4orf32Q8N8J7 132 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 VN1R2Q8NFZ6 395 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 ASAP3Q8TDY4 903 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 PIGOQ8TEQ8 1089 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 PSPC1Q8WXF1 523 aaKnown RBP11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 INO80BQ9C086 356 aaPredicted RBP11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 FOXP1Q9H334 677 aaPredicted RBP11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 SH2B1Q9NRF2 756 aaPredicted RBP11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 AAASQ9NRG9 546 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 DACT1Q9NYF0 836 aa11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 PIN4Q9Y237 131 aaKnown RBP11.65□□□□□ -0.54
PRPF40B-204ENST00000527253 PER2O15055 1255 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 B4GALT3O60512 393 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 ZNF623O75123 536 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 OFD1O75665 1012 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 GLP2RO95838 553 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms