RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 RNF169Q8NCN4 708 aa23.3■■□□□ 1.32
VPS28-203ENST00000524521 MRPL38Q96DV4 380 aaKnown RBP23.3■■□□□ 1.32
VPS28-203ENST00000524521 C11orf84Q9BUA3 381 aaPredicted RBP23.3■■□□□ 1.32
VPS28-203ENST00000524521 POLR3CQ9BUI4 534 aaPredicted RBP23.3■■□□□ 1.32
VPS28-203ENST00000524521 IFT122Q9HBG6 1241 aa23.3■■□□□ 1.32
VPS28-203ENST00000524521 CHST12Q9NRB3 414 aa23.3■■□□□ 1.32
VPS28-203ENST00000524521 DGAT1O75907 488 aa23.29■■□□□ 1.32
VPS28-203ENST00000524521 RARRES1P49788 294 aa23.29■■□□□ 1.32
VPS28-203ENST00000524521 RALGAPA2Q2PPJ7 1873 aa23.29■■□□□ 1.32
VPS28-203ENST00000524521 SPOUT1Q5T280 376 aaKnown RBP23.29■■□□□ 1.32
VPS28-203ENST00000524521 LARP1BQ659C4 914 aaKnown RBP23.29■■□□□ 1.32
VPS28-203ENST00000524521 FERMT3Q86UX7 667 aa23.29■■□□□ 1.32
VPS28-203ENST00000524521 ECHDC2Q86YB7 292 aa23.29■■□□□ 1.32
VPS28-203ENST00000524521 ATXN2LQ8WWM7 1075 aaKnown RBP23.29■■□□□ 1.32
VPS28-203ENST00000524521 XPNPEP1Q9NQW7 623 aa23.29■■□□□ 1.32
VPS28-203ENST00000524521 DACT1Q9NYF0 836 aa23.29■■□□□ 1.32
VPS28-203ENST00000524521 RNF149Q8NC42 400 aa23.28■■□□□ 1.32
VPS28-203ENST00000524521 NACC1Q96RE7 527 aa23.28■■□□□ 1.32
VPS28-203ENST00000524521 PLVAPQ9BX97 442 aa23.28■■□□□ 1.32
VPS28-203ENST00000524521 LRWD1Q9UFC0 647 aa23.28■■□□□ 1.32
VPS28-203ENST00000524521 PIN4Q9Y237 131 aaKnown RBP23.28■■□□□ 1.32
VPS28-203ENST00000524521 TRANK1O15050 2925 aa23.28■■□□□ 1.32
VPS28-203ENST00000524521 ARID2Q68CP9 1835 aa23.27■■□□□ 1.32
VPS28-203ENST00000524521 EYSQ5T1H1 3165 aa23.27■■□□□ 1.32
VPS28-203ENST00000524521 A0A0U1RQF3 1178 aa23.27■■□□□ 1.32
VPS28-203ENST00000524521 GRM6O15303 877 aa23.27■■□□□ 1.32
VPS28-203ENST00000524521 RPA1P27694 616 aa23.27■■□□□ 1.32
VPS28-203ENST00000524521 FXR2P51116 673 aaKnown RBP eCLIP23.27■■□□□ 1.32
VPS28-203ENST00000524521 MRPS5P82675 430 aaKnown RBP23.27■■□□□ 1.32
VPS28-203ENST00000524521 MXD4Q14582 209 aaPredicted RBP23.27■■□□□ 1.32
VPS28-203ENST00000524521 RILPL1Q5EBL4 403 aa23.27■■□□□ 1.32
VPS28-203ENST00000524521 TWF2Q6IBS0 349 aaKnown RBP23.27■■□□□ 1.32
VPS28-203ENST00000524521 SRGAP1Q7Z6B7 1085 aa23.27■■□□□ 1.32
VPS28-203ENST00000524521 ALG13Q9NP73 1137 aaKnown RBP23.27■■□□□ 1.32
VPS28-203ENST00000524521 HOXA2O43364 376 aa23.26■■□□□ 1.31
VPS28-203ENST00000524521 USO1O60763 962 aaKnown RBP23.26■■□□□ 1.31
VPS28-203ENST00000524521 CCT6AP40227 531 aaKnown RBP23.26■■□□□ 1.31
VPS28-203ENST00000524521 TFF2Q03403 129 aa23.26■■□□□ 1.31
VPS28-203ENST00000524521 PDIA5Q14554 519 aa23.26■■□□□ 1.31
VPS28-203ENST00000524521 TJAP1Q5JTD0 557 aa23.26■■□□□ 1.31
VPS28-203ENST00000524521 POTEGQ6S5H5 508 aa23.26■■□□□ 1.31
VPS28-203ENST00000524521 HLA-CQ95604 372 aa23.26■■□□□ 1.31
VPS28-203ENST00000524521 ASB2Q96Q27 587 aa23.26■■□□□ 1.31
VPS28-203ENST00000524521 COL25A1Q9BXS0 654 aaPredicted RBP23.26■■□□□ 1.31
VPS28-203ENST00000524521 TMEM117Q9H0C3 514 aa23.26■■□□□ 1.31
VPS28-203ENST00000524521 MINDY3Q9H8M7 445 aa23.26■■□□□ 1.31
VPS28-203ENST00000524521 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.26■■□□□ 1.31
VPS28-203ENST00000524521 TYW1Q9NV66 732 aaKnown RBP23.26■■□□□ 1.31
VPS28-203ENST00000524521 DBR1Q9UK59 544 aaKnown RBP23.26■■□□□ 1.31
VPS28-203ENST00000524521 PLAGL2Q9UPG8 496 aa23.26■■□□□ 1.31
VPS28-203ENST00000524521 LAD1O00515 517 aa23.25■■□□□ 1.31
VPS28-203ENST00000524521 EOMESO95936 686 aa23.25■■□□□ 1.31
VPS28-203ENST00000524521 PHKA2P46019 1235 aa23.25■■□□□ 1.31
VPS28-203ENST00000524521 CUL4AQ13619 759 aa23.25■■□□□ 1.31
VPS28-203ENST00000524521 TFDP1Q14186 410 aa23.25■■□□□ 1.31
VPS28-203ENST00000524521 NAALADL2Q58DX5 795 aa23.25■■□□□ 1.31
VPS28-203ENST00000524521 HAUS3Q68CZ6 603 aa23.25■■□□□ 1.31
VPS28-203ENST00000524521 MAEAQ7L5Y9 396 aa23.25■■□□□ 1.31
VPS28-203ENST00000524521 ABI1Q8IZP0 508 aa23.25■■□□□ 1.31
VPS28-203ENST00000524521 KLHL23Q8NBE8 558 aa23.25■■□□□ 1.31
VPS28-203ENST00000524521 P2RX5Q93086 422 aa23.25■■□□□ 1.31
VPS28-203ENST00000524521 CASD1Q96PB1 797 aa23.25■■□□□ 1.31
VPS28-203ENST00000524521 RAB34Q9BZG1 259 aa23.25■■□□□ 1.31
VPS28-203ENST00000524521 RNF19AQ9NV58 838 aa23.25■■□□□ 1.31
VPS28-203ENST00000524521 COG5Q9UP83 839 aa23.25■■□□□ 1.31
VPS28-203ENST00000524521 FNDC1Q4ZHG4 1894 aaPredicted RBP23.25■■□□□ 1.31
VPS28-203ENST00000524521 CSPG5O95196 566 aa23.24■■□□□ 1.31
VPS28-203ENST00000524521 ARL2P36404 184 aa23.24■■□□□ 1.31
VPS28-203ENST00000524521 TIGD5Q53EQ6 642 aa23.24■■□□□ 1.31
VPS28-203ENST00000524521 DTHD1Q6ZMT9 781 aa23.24■■□□□ 1.31
VPS28-203ENST00000524521 ZNF598Q86UK7 904 aaKnown RBP23.24■■□□□ 1.31
VPS28-203ENST00000524521 ASAP3Q8TDY4 903 aa23.24■■□□□ 1.31
VPS28-203ENST00000524521 SYMPKQ92797 1274 aaKnown RBP23.24■■□□□ 1.31
VPS28-203ENST00000524521 LMAN2LQ9H0V9 348 aa23.24■■□□□ 1.31
VPS28-203ENST00000524521 AAASQ9NRG9 546 aa23.24■■□□□ 1.31
VPS28-203ENST00000524521 HCSTQ9UBK5 93 aa23.24■■□□□ 1.31
VPS28-203ENST00000524521 PCDHB12Q9Y5F1 795 aa23.24■■□□□ 1.31
VPS28-203ENST00000524521 ITGB1P05556 798 aa23.23■■□□□ 1.31
VPS28-203ENST00000524521 SKIP12755 728 aa23.23■■□□□ 1.31
VPS28-203ENST00000524521 MUTP22033 750 aa23.23■■□□□ 1.31
VPS28-203ENST00000524521 PTENP60484 403 aa23.23■■□□□ 1.31
VPS28-203ENST00000524521 AAK1Q2M2I8 961 aa23.23■■□□□ 1.31
VPS28-203ENST00000524521 LONRF3Q496Y0 759 aa23.23■■□□□ 1.31
VPS28-203ENST00000524521 IGSF22Q8N9C0 903 aa23.23■■□□□ 1.31
VPS28-203ENST00000524521 HELQQ8TDG4 1101 aa23.23■■□□□ 1.31
VPS28-203ENST00000524521 TRAIPQ9BWF2 469 aa23.23■■□□□ 1.31
VPS28-203ENST00000524521 POLR3FQ9H1D9 316 aaPredicted RBP23.23■■□□□ 1.31
VPS28-203ENST00000524521 AGPAT5Q9NUQ2 364 aa23.23■■□□□ 1.31
VPS28-203ENST00000524521 STK24Q9Y6E0 443 aa23.23■■□□□ 1.31
VPS28-203ENST00000524521 PRUNE2Q8WUY3 3088 aa23.23■■□□□ 1.31
VPS28-203ENST00000524521 ARHGEF35A5YM69 484 aa23.22■■□□□ 1.31
VPS28-203ENST00000524521 ATF7P17544 494 aaPredicted RBP23.22■■□□□ 1.31
VPS28-203ENST00000524521 GLRA2P23416 452 aa23.22■■□□□ 1.31
VPS28-203ENST00000524521 PRPHP41219 470 aa23.22■■□□□ 1.31
VPS28-203ENST00000524521 POU5F1BQ06416 359 aa23.22■■□□□ 1.31
VPS28-203ENST00000524521 CAPSQ13938 189 aa23.22■■□□□ 1.31
VPS28-203ENST00000524521 IL17AQ16552 155 aa23.22■■□□□ 1.31
VPS28-203ENST00000524521 ECM1Q16610 540 aa23.22■■□□□ 1.31
VPS28-203ENST00000524521 TCEAL5Q5H9L2 206 aa23.22■■□□□ 1.31
VPS28-203ENST00000524521 CLLU1OSQ5K130 101 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms