RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 HLA-CQ95604 372 aa18.14■□□□□ 0.49
LSM1-205ENST00000523511 PPP2R3CQ969Q6 453 aa18.14■□□□□ 0.49
LSM1-205ENST00000523511 TMEM143Q96AN5 459 aa18.14■□□□□ 0.49
LSM1-205ENST00000523511 RC3H2Q9HBD1 1191 aaKnown RBP18.14■□□□□ 0.49
LSM1-205ENST00000523511 POTEMA6NI47 508 aa18.13■□□□□ 0.49
LSM1-205ENST00000523511 FXR2P51116 673 aaKnown RBP eCLIP18.13■□□□□ 0.49
LSM1-205ENST00000523511 RAB27AP51159 221 aa18.13■□□□□ 0.49
LSM1-205ENST00000523511 PTGDRQ13258 359 aa18.13■□□□□ 0.49
LSM1-205ENST00000523511 PAN2Q504Q3 1202 aaKnown RBP18.13■□□□□ 0.49
LSM1-205ENST00000523511 TWF2Q6IBS0 349 aaKnown RBP18.13■□□□□ 0.49
LSM1-205ENST00000523511 FERMT3Q86UX7 667 aa18.13■□□□□ 0.49
LSM1-205ENST00000523511 CATSPER3Q86XQ3 398 aa18.13■□□□□ 0.49
LSM1-205ENST00000523511 ZNF579Q8NAF0 562 aaKnown RBP18.13■□□□□ 0.49
LSM1-205ENST00000523511 MCPH1Q8NEM0 835 aa18.13■□□□□ 0.49
LSM1-205ENST00000523511 PGBD4Q96DM1 585 aa18.13■□□□□ 0.49
LSM1-205ENST00000523511 TMEM117Q9H0C3 514 aa18.13■□□□□ 0.49
LSM1-205ENST00000523511 DBR1Q9UK59 544 aaKnown RBP18.13■□□□□ 0.49
LSM1-205ENST00000523511 WNT7AO00755 349 aa18.12■□□□□ 0.49
LSM1-205ENST00000523511 ZBTB39O15060 712 aa18.12■□□□□ 0.49
LSM1-205ENST00000523511 ERLIN2O94905 339 aa18.12■□□□□ 0.49
LSM1-205ENST00000523511 PRPHP41219 470 aa18.12■□□□□ 0.49
LSM1-205ENST00000523511 RARRES1P49788 294 aa18.12■□□□□ 0.49
LSM1-205ENST00000523511 KRT79Q5XKE5 535 aa18.12■□□□□ 0.49
LSM1-205ENST00000523511 SPRED2Q7Z698 418 aa18.12■□□□□ 0.49
LSM1-205ENST00000523511 ECHDC2Q86YB7 292 aa18.12■□□□□ 0.49
LSM1-205ENST00000523511 KSR1Q8IVT5 923 aa18.12■□□□□ 0.49
LSM1-205ENST00000523511 RNF149Q8NC42 400 aa18.12■□□□□ 0.49
LSM1-205ENST00000523511 RNF169Q8NCN4 708 aa18.12■□□□□ 0.49
LSM1-205ENST00000523511 PIGOQ8TEQ8 1089 aa18.12■□□□□ 0.49
LSM1-205ENST00000523511 ASB2Q96Q27 587 aa18.12■□□□□ 0.49
LSM1-205ENST00000523511 TRAIPQ9BWF2 469 aa18.12■□□□□ 0.49
LSM1-205ENST00000523511 DAXXQ9UER7 740 aaPredicted RBP18.12■□□□□ 0.49
LSM1-205ENST00000523511 PIN4Q9Y237 131 aaKnown RBP18.12■□□□□ 0.49
LSM1-205ENST00000523511 MRPL42Q9Y6G3 142 aaKnown RBP18.12■□□□□ 0.49
LSM1-205ENST00000523511 COL4A6Q14031 1691 aa18.12■□□□□ 0.49
LSM1-205ENST00000523511 ARHGEF35A5YM69 484 aa18.11■□□□□ 0.49
LSM1-205ENST00000523511 AXLP30530 894 aa18.11■□□□□ 0.49
LSM1-205ENST00000523511 CCT6AP40227 531 aaKnown RBP18.11■□□□□ 0.49
LSM1-205ENST00000523511 FAM102BQ5T8I3 360 aa18.11■□□□□ 0.49
LSM1-205ENST00000523511 CNNM3Q8NE01 707 aa18.11■□□□□ 0.49
LSM1-205ENST00000523511 MRPL9Q9BYD2 267 aaKnown RBP18.11■□□□□ 0.49
LSM1-205ENST00000523511 NSUN3Q9H649 340 aaKnown RBP18.11■□□□□ 0.49
LSM1-205ENST00000523511 IFT122Q9HBG6 1241 aa18.11■□□□□ 0.49
LSM1-205ENST00000523511 BMP2KQ9NSY1 1161 aaPredicted RBP18.11■□□□□ 0.49
LSM1-205ENST00000523511 PUF60Q9UHX1 559 aaKnown RBP18.11■□□□□ 0.49
LSM1-205ENST00000523511 MYH9P35579 1960 aaKnown RBP18.1■□□□□ 0.49
LSM1-205ENST00000523511 CSDE1O75534 798 aaKnown RBP18.1■□□□□ 0.49
LSM1-205ENST00000523511 CD2BP2O95400 341 aaKnown RBP18.1■□□□□ 0.49
LSM1-205ENST00000523511 SPATA31C1P0DKV0 1188 aa18.1■□□□□ 0.49
LSM1-205ENST00000523511 LAG3P18627 525 aa18.1■□□□□ 0.49
LSM1-205ENST00000523511 FGFR4P22455 802 aa18.1■□□□□ 0.49
LSM1-205ENST00000523511 KCTD17Q8N5Z5 321 aa18.1■□□□□ 0.49
LSM1-205ENST00000523511 C4orf32Q8N8J7 132 aa18.1■□□□□ 0.49
LSM1-205ENST00000523511 PLAGL2Q9UPG8 496 aa18.1■□□□□ 0.49
LSM1-205ENST00000523511 DNM3Q9UQ16 869 aa18.1■□□□□ 0.49
LSM1-205ENST00000523511 PCDHB6Q9Y5E3 794 aa18.1■□□□□ 0.49
LSM1-205ENST00000523511 COL6A3P12111 3177 aa18.1■□□□□ 0.49
LSM1-205ENST00000523511 ZNF623O75123 536 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 MED24O75448 989 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 BMP15O95972 392 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 FGFR1P11362 822 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 TOB1P50616 345 aaPredicted RBP18.09■□□□□ 0.49
LSM1-205ENST00000523511 KRT17Q04695 432 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 UBE3AQ05086 875 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 CUL4AQ13619 759 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 BMS1Q14692 1282 aaKnown RBP18.09■□□□□ 0.49
LSM1-205ENST00000523511 GLB1LQ6UWU2 654 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 BRAPQ7Z569 592 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 HACE1Q8IYU2 909 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 LRRC43Q8N309 656 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 NFKBIZQ9BYH8 718 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 UBN1Q9NPG3 1134 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.09■□□□□ 0.49
LSM1-205ENST00000523511 AGPAT5Q9NUQ2 364 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 TYW1Q9NV66 732 aaKnown RBP18.09■□□□□ 0.49
LSM1-205ENST00000523511 GTF3C3Q9Y5Q9 886 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 MICAL3Q7RTP6 2002 aa18.09■□□□□ 0.49
LSM1-205ENST00000523511 GBF1Q92538 1859 aa18.08■□□□□ 0.49
LSM1-205ENST00000523511 INO80B-WBP1J3KQ70 363 aa18.08■□□□□ 0.48
LSM1-205ENST00000523511 USO1O60763 962 aaKnown RBP18.08■□□□□ 0.48
LSM1-205ENST00000523511 PPM1AP35813 382 aa18.08■□□□□ 0.48
LSM1-205ENST00000523511 ARL2P36404 184 aa18.08■□□□□ 0.48
LSM1-205ENST00000523511 PTENP60484 403 aa18.08■□□□□ 0.48
LSM1-205ENST00000523511 PDE12Q6L8Q7 609 aaKnown RBP18.08■□□□□ 0.48
LSM1-205ENST00000523511 ZBTB8OSQ8IWT0 167 aa18.08■□□□□ 0.48
LSM1-205ENST00000523511 THNSL1Q8IYQ7 743 aa18.08■□□□□ 0.48
LSM1-205ENST00000523511 IGSF22Q8N9C0 903 aa18.08■□□□□ 0.48
LSM1-205ENST00000523511 KLHL23Q8NBE8 558 aa18.08■□□□□ 0.48
LSM1-205ENST00000523511 MICAL1Q8TDZ2 1067 aa18.08■□□□□ 0.48
LSM1-205ENST00000523511 SNX29Q8TEQ0 813 aa18.08■□□□□ 0.48
LSM1-205ENST00000523511 CCDC51Q96ER9 411 aa18.08■□□□□ 0.48
LSM1-205ENST00000523511 INTS4Q96HW7 963 aaKnown RBP18.08■□□□□ 0.48
LSM1-205ENST00000523511 PRDM6Q9NQX0 595 aa18.08■□□□□ 0.48
LSM1-205ENST00000523511 FAM105AQ9NUU6 356 aa18.08■□□□□ 0.48
LSM1-205ENST00000523511 KCNG1Q9UIX4 513 aa18.08■□□□□ 0.48
LSM1-205ENST00000523511 KIAA1024Q9UPX6 916 aa18.08■□□□□ 0.48
LSM1-205ENST00000523511 ALDH7A1P49419 539 aaKnown RBP18.07■□□□□ 0.48
LSM1-205ENST00000523511 NBR1Q14596 966 aa18.07■□□□□ 0.48
LSM1-205ENST00000523511 PPP2R5AQ15172 486 aa18.07■□□□□ 0.48
LSM1-205ENST00000523511 PUS10Q3MIT2 529 aaKnown RBP18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms