RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 CCDC51Q96ER9 411 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 NIFKQ9BYG3 293 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 SLKQ9H2G2 1235 aaPredicted RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 PSTPIP2Q9H939 334 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 KCNMB3Q9NPA1 279 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 NPDC1Q9NQX5 325 aaPredicted RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 TMEM39AQ9NV64 488 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 R4GN57 208 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 ARID2Q68CP9 1835 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 IGSF9BQ9UPX0 1349 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 IGLV3-22A0A075B6J6 115 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 FAM237AA0A1B0GTK4 181 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 FAM196BA6NMK8 535 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 MAGEB2O15479 319 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 F2P00734 622 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 MMP1P03956 469 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 NR3C2P08235 984 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 MAPTP10636 758 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 RPS6P62753 249 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 TBC1D8BQ0IIM8 1120 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 NPY5RQ15761 445 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 ADCK5Q3MIX3 580 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 WWC2Q6AWC2 1192 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 NFXL1Q6ZNB6 911 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 CCAR1Q8IX12 1150 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 BLIDQ8IZY5 108 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 ANKRD35Q8N283 1001 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 LINC01465Q8N7H1 131 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 DDX11Q96FC9 970 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 POLR3CQ9BUI4 534 aaPredicted RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 CBX8Q9HC52 389 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 RAVER2Q9HCJ3 691 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 TUFT1Q9NNX1 390 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 ANKEF1Q9NU02 776 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 TBC1D7Q9P0N9 293 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 TFIP11Q9UBB9 837 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 DBR1Q9UK59 544 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 CEP131Q9UPN4 1083 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 SETD2Q9BYW2 2564 aaPredicted RBP3.2□□□□□ -1.9
MCF2-208ENST00000519895 MYH7BA7E2Y1 1941 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 ANKRD62A6NC57 917 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 ARVCFO00192 962 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 ASAP2O43150 1006 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 CHGBP05060 677 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 MYL1P05976 194 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 KCNA2P16389 499 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 AK2P54819 239 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 HAND2P61296 217 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 SNRPFP62306 86 aaKnown RBP3.2□□□□□ -1.9
MCF2-208ENST00000519895 SRSF11Q05519 484 aaKnown RBP3.2□□□□□ -1.9
MCF2-208ENST00000519895 ARHGAP1Q07960 439 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 NONOQ15233 471 aaKnown RBP eCLIP3.2□□□□□ -1.9
MCF2-208ENST00000519895 QPCTQ16769 361 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 CEP55Q53EZ4 464 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 NAALADL2Q58DX5 795 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 RILPL1Q5EBL4 403 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 MUM1L1Q5H9M0 696 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 FAM160B1Q5W0V3 765 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 TAF2Q6P1X5 1199 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 NCAPG2Q86XI2 1143 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 FAM181AQ8N9Y4 354 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 TRPV1Q8NER1 839 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 KIFC2Q96AC6 838 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 PIGSQ96S52 555 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 ANO3Q9BYT9 981 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 RHOBTB2Q9BYZ6 727 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 AP5M1Q9H0R1 490 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 CUEDC2Q9H467 287 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 NSUN3Q9H649 340 aaKnown RBP3.2□□□□□ -1.9
MCF2-208ENST00000519895 C17orf75Q9HAS0 396 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 EIF4ENIF1Q9NRA8 985 aaKnown RBP3.2□□□□□ -1.9
MCF2-208ENST00000519895 PCDHA6Q9UN73 950 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 PCDHA8Q9Y5H6 950 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 MAFBQ9Y5Q3 323 aaPredicted RBP3.2□□□□□ -1.9
MCF2-208ENST00000519895 IGKV6-21A0A0C4DH24 114 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 SPDYE3A6NKU9 549 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 TERTO14746 1132 aaKnown RBP3.2□□□□□ -1.9
MCF2-208ENST00000519895 TREHO43280 583 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 PRDM1O75626 825 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 ATP2A2P16615 1042 aaKnown RBP3.2□□□□□ -1.9
MCF2-208ENST00000519895 CDC27P30260 824 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 KRT2P35908 639 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 TNFAIP2Q03169 654 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 VAC14Q08AM6 782 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 SCRN1Q12765 414 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 TRIM32Q13049 653 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 BAATQ14032 418 aaPredicted RBP3.2□□□□□ -1.9
MCF2-208ENST00000519895 EPHA7Q15375 998 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 DGKDQ16760 1214 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 TTBK2Q6IQ55 1244 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 KCTD1Q719H9 257 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 C4orf19Q8IY42 314 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 REXO1Q8N1G1 1221 aaKnown RBP3.2□□□□□ -1.9
MCF2-208ENST00000519895 STAG2Q8N3U4 1231 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 FBXO18Q8NFZ0 1043 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 BRF1Q92994 677 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 HVCN1Q96D96 273 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 AGBL1Q96MI9 1066 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 SMARCAD1Q9H4L7 1026 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 ELAC1Q9H777 363 aaKnown RBP3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms