RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 GRB10Q13322 594 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 EPC2Q52LR7 807 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 MIS18BP1Q6P0N0 1132 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 CCNI2Q6ZMN8 369 aaPredicted RBP12.57□□□□□ -0.4
SYNPO-204ENST00000519664 EXOC1LA0A1B0GW35 172 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 TTI1O43156 1089 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 SUN1O94901 812 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 TROVE2P10155 538 aaKnown RBP eCLIP12.57□□□□□ -0.4
SYNPO-204ENST00000519664 CCND2P30279 289 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 CUL1Q13616 776 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 CATSPER3Q86XQ3 398 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 TRIM51Q9BSJ1 452 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 WDR64B1ANS9 1081 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 EYA4O95677 639 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 PSAPP07602 524 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 NT5C2P49902 561 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 SMAD1Q15797 465 aaKnown RBP12.57□□□□□ -0.4
SYNPO-204ENST00000519664 TTI2Q6NXR4 508 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 DCPSQ96C86 337 aaKnown RBP12.57□□□□□ -0.4
SYNPO-204ENST00000519664 KLHL29Q96CT2 875 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.57□□□□□ -0.4
SYNPO-204ENST00000519664 NUP85Q9BW27 656 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 ZNF18P17022 549 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 CA4P22748 312 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 YWHAEP62258 255 aaKnown RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 IRX4P78413 519 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 SNCBQ16143 134 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 PPP1R18Q6NYC8 613 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 SRRM1Q8IYB3 904 aaKnown RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 VGLL2Q8N8G2 317 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 TAF1DQ9H5J8 278 aaPredicted RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 NGRNQ9NPE2 291 aaKnown RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 HMGB1P1B2RPK0 211 aaPredicted RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 STK10O94804 968 aaKnown RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 NPEPPSP55786 919 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 TBC1D1Q86TI0 1168 aaPredicted RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 TRIM50Q86XT4 487 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 LMNTD2Q8IXW0 634 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 ZNF564Q8TBZ8 553 aaPredicted RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 RNPC3Q96LT9 517 aaKnown RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 FAM118BQ9BPY3 351 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 CELF4Q9BZC1 486 aaKnown RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 MRPL47Q9HD33 250 aaKnown RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 PCSK1NQ9UHG2 260 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 DMGDHQ9UI17 866 aaKnown RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 PDS5AQ29RF7 1337 aaKnown RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 PDXKO00764 312 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 CLDN3O15551 220 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 MMEP08473 750 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 EZH2Q15910 746 aaKnown RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 MAP7D1Q3KQU3 841 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 GLE1Q53GS7 698 aaKnown RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 RC3H1Q5TC82 1133 aaKnown RBP12.56□□□□□ -0.4
SYNPO-204ENST00000519664 FAM160B1Q5W0V3 765 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 OR6B2Q6IFH4 312 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 MED10Q9BTT4 135 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 PLAGL2Q9UPG8 496 aa12.56□□□□□ -0.4
SYNPO-204ENST00000519664 ATMINO43313 823 aaPredicted RBP12.55□□□□□ -0.4
SYNPO-204ENST00000519664 INHBAP08476 426 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 PHBP35232 272 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 SOX5P35711 763 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 ECE1P42892 770 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 GRIK5Q16478 980 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 NUDT12Q9BQG2 462 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 SEMA6BQ9H3T3 888 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 KBTBD4Q9NVX7 518 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 ARHGAP42A6NI28 874 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 CIB2O75838 187 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 ABL1P00519 1130 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 CASP4P49662 377 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 TAF12Q16514 161 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 PLA2G4FQ68DD2 849 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 TRIM65Q6PJ69 517 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 CCNYQ8ND76 341 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 ACER1Q8TDN7 264 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 FAM49AQ9H0Q0 323 aaPredicted RBP12.55□□□□□ -0.4
SYNPO-204ENST00000519664 GGT7Q9UJ14 662 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 TXNDC9O14530 226 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 CHUKO15111 745 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 KCNJ1P48048 391 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 ACOT2P49753 483 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 PPP6R3Q5H9R7 873 aaPredicted RBP12.55□□□□□ -0.4
SYNPO-204ENST00000519664 BEND6Q5SZJ8 279 aaPredicted RBP12.55□□□□□ -0.4
SYNPO-204ENST00000519664 DPP9Q86TI2 863 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 FUT8Q9BYC5 575 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 TMEM39BQ9GZU3 492 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 KLHL11Q9NVR0 708 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 CYTH3O43739 400 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 HMGCS2P54868 508 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 PPP4CP60510 307 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 IL9RQ01113 521 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 SATB1Q01826 763 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 SLC27A3Q5K4L6 730 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 CDKAL1Q5VV42 579 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 ZNF449Q6P9G9 518 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 PTF1AQ7RTS3 328 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 FRMD5Q7Z6J6 570 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 SLC35G2Q8TBE7 412 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 CDHR1Q96JP9 859 aa12.55□□□□□ -0.4
SYNPO-204ENST00000519664 PACSIN1Q9BY11 444 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 138.3 ms