RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 POLGP54098 1239 aaPredicted RBP19.57■□□□□ 0.72
DDX41-217ENST00000515562 SPIRE1Q08AE8 756 aa19.57■□□□□ 0.72
DDX41-217ENST00000515562 PDE12Q6L8Q7 609 aaKnown RBP19.57■□□□□ 0.72
DDX41-217ENST00000515562 DIS3L2Q8IYB7 885 aaKnown RBP19.57■□□□□ 0.72
DDX41-217ENST00000515562 GJD3Q8N144 294 aa19.57■□□□□ 0.72
DDX41-217ENST00000515562 RNF169Q8NCN4 708 aa19.57■□□□□ 0.72
DDX41-217ENST00000515562 NLRP4Q96MN2 994 aa19.57■□□□□ 0.72
DDX41-217ENST00000515562 CASD1Q96PB1 797 aa19.57■□□□□ 0.72
DDX41-217ENST00000515562 IGFLR1Q9H665 355 aa19.57■□□□□ 0.72
DDX41-217ENST00000515562 RNF19AQ9NV58 838 aa19.57■□□□□ 0.72
DDX41-217ENST00000515562 HCSTQ9UBK5 93 aa19.57■□□□□ 0.72
DDX41-217ENST00000515562 LZTS1Q9Y250 596 aa19.57■□□□□ 0.72
DDX41-217ENST00000515562 ARID2Q68CP9 1835 aa19.56■□□□□ 0.72
DDX41-217ENST00000515562 SKIP12755 728 aa19.56■□□□□ 0.72
DDX41-217ENST00000515562 YWHABP31946 246 aaKnown RBP19.56■□□□□ 0.72
DDX41-217ENST00000515562 SSTR3P32745 418 aaPredicted RBP19.56■□□□□ 0.72
DDX41-217ENST00000515562 GTF2F1P35269 517 aaKnown RBP eCLIP19.56■□□□□ 0.72
DDX41-217ENST00000515562 NDUFV1P49821 464 aa19.56■□□□□ 0.72
DDX41-217ENST00000515562 NPEPPSP55786 919 aa19.56■□□□□ 0.72
DDX41-217ENST00000515562 ADAM15Q13444 863 aa19.56■□□□□ 0.72
DDX41-217ENST00000515562 CALCRLQ16602 461 aa19.56■□□□□ 0.72
DDX41-217ENST00000515562 OTUD6AQ7L8S5 288 aa19.56■□□□□ 0.72
DDX41-217ENST00000515562 ZNF598Q86UK7 904 aaKnown RBP19.56■□□□□ 0.72
DDX41-217ENST00000515562 EFHBQ8N7U6 833 aa19.56■□□□□ 0.72
DDX41-217ENST00000515562 PSPC1Q8WXF1 523 aaKnown RBP19.56■□□□□ 0.72
DDX41-217ENST00000515562 TRAIPQ9BWF2 469 aa19.56■□□□□ 0.72
DDX41-217ENST00000515562 MRPL9Q9BYD2 267 aaKnown RBP19.56■□□□□ 0.72
DDX41-217ENST00000515562 DHX33Q9H6R0 707 aaKnown RBP19.56■□□□□ 0.72
DDX41-217ENST00000515562 ZSWIM4Q9H7M6 989 aa19.56■□□□□ 0.72
DDX41-217ENST00000515562 WRAP73Q9P2S5 460 aaPredicted RBP19.56■□□□□ 0.72
DDX41-217ENST00000515562 COL4A3BPQ9Y5P4 624 aa19.56■□□□□ 0.72
DDX41-217ENST00000515562 BTBD18B2RXH4 712 aa19.55■□□□□ 0.72
DDX41-217ENST00000515562 NEMFO60524 1076 aa19.55■□□□□ 0.72
DDX41-217ENST00000515562 CSDE1O75534 798 aaKnown RBP19.55■□□□□ 0.72
DDX41-217ENST00000515562 SEC24BO95487 1268 aa19.55■□□□□ 0.72
DDX41-217ENST00000515562 NRIP1P48552 1158 aa19.55■□□□□ 0.72
DDX41-217ENST00000515562 DLX2Q07687 328 aaPredicted RBP19.55■□□□□ 0.72
DDX41-217ENST00000515562 SMAD4Q13485 552 aaKnown RBP19.55■□□□□ 0.72
DDX41-217ENST00000515562 CLLU1OSQ5K130 101 aa19.55■□□□□ 0.72
DDX41-217ENST00000515562 TWF2Q6IBS0 349 aaKnown RBP19.55■□□□□ 0.72
DDX41-217ENST00000515562 ADGRD2Q7Z7M1 963 aa19.55■□□□□ 0.72
DDX41-217ENST00000515562 MICAL1Q8TDZ2 1067 aa19.55■□□□□ 0.72
DDX41-217ENST00000515562 ZNF558Q96NG5 402 aa19.55■□□□□ 0.72
DDX41-217ENST00000515562 CD320Q9NPF0 282 aa19.55■□□□□ 0.72
DDX41-217ENST00000515562 PUF60Q9UHX1 559 aaKnown RBP19.55■□□□□ 0.72
DDX41-217ENST00000515562 CD207Q9UJ71 328 aa19.55■□□□□ 0.72
DDX41-217ENST00000515562 PIN4Q9Y237 131 aaKnown RBP19.55■□□□□ 0.72
DDX41-217ENST00000515562 LINC01565O15544 149 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 ATF7P17544 494 aaPredicted RBP19.54■□□□□ 0.72
DDX41-217ENST00000515562 PHKA2P46019 1235 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 RAB27AP51159 221 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 PLCB3Q01970 1234 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 CYP4A11Q02928 519 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 ZP2Q05996 745 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 SMAD2Q15796 467 aaKnown RBP19.54■□□□□ 0.72
DDX41-217ENST00000515562 CLUL1Q15846 466 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 KCNT2Q6UVM3 1135 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 LRRC55Q6ZSA7 311 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 CATSPER4Q7RTX7 472 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 KSR1Q8IVT5 923 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 ADHFE1Q8IWW8 467 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 TCP11Q8WWU5 503 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 MRPS27Q92552 414 aaKnown RBP19.54■□□□□ 0.72
DDX41-217ENST00000515562 DYDC2Q96IM9 177 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 CDCA3Q99618 268 aaPredicted RBP19.54■□□□□ 0.72
DDX41-217ENST00000515562 RGL1Q9NZL6 768 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 PCDHA12Q9UN75 941 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 LIMCH1Q9UPQ0 1083 aa19.54■□□□□ 0.72
DDX41-217ENST00000515562 COL9A1P20849 921 aa19.53■□□□□ 0.72
DDX41-217ENST00000515562 FOSBP53539 338 aa19.53■□□□□ 0.72
DDX41-217ENST00000515562 ST3GAL1Q11201 340 aa19.53■□□□□ 0.72
DDX41-217ENST00000515562 EMC2Q15006 297 aa19.53■□□□□ 0.72
DDX41-217ENST00000515562 SAFBQ15424 915 aaKnown RBP eCLIP19.53■□□□□ 0.72
DDX41-217ENST00000515562 HELQQ8TDG4 1101 aa19.53■□□□□ 0.72
DDX41-217ENST00000515562 POP1Q99575 1024 aaKnown RBP19.53■□□□□ 0.72
DDX41-217ENST00000515562 EPHX3Q9H6B9 360 aa19.53■□□□□ 0.72
DDX41-217ENST00000515562 TLE6Q9H808 572 aa19.53■□□□□ 0.72
DDX41-217ENST00000515562 TTC12Q9H892 705 aaPredicted RBP19.53■□□□□ 0.72
DDX41-217ENST00000515562 IFT122Q9HBG6 1241 aa19.53■□□□□ 0.72
DDX41-217ENST00000515562 CARNS1A5YM72 827 aa19.52■□□□□ 0.72
DDX41-217ENST00000515562 FSCN2O14926 492 aa19.52■□□□□ 0.72
DDX41-217ENST00000515562 MBTPS2O43462 519 aa19.52■□□□□ 0.72
DDX41-217ENST00000515562 LYPLA2O95372 231 aa19.52■□□□□ 0.72
DDX41-217ENST00000515562 KRT17Q04695 432 aa19.52■□□□□ 0.72
DDX41-217ENST00000515562 CTTNQ14247 550 aaKnown RBP19.52■□□□□ 0.72
DDX41-217ENST00000515562 XKR9Q5GH70 373 aa19.52■□□□□ 0.72
DDX41-217ENST00000515562 SRGAP1Q7Z6B7 1085 aa19.52■□□□□ 0.72
DDX41-217ENST00000515562 RBM23Q86U06 439 aaKnown RBP19.52■□□□□ 0.72
DDX41-217ENST00000515562 TPH2Q8IWU9 490 aa19.52■□□□□ 0.72
DDX41-217ENST00000515562 ZNF579Q8NAF0 562 aaKnown RBP19.52■□□□□ 0.72
DDX41-217ENST00000515562 PRPF31Q8WWY3 499 aaKnown RBP19.52■□□□□ 0.72
DDX41-217ENST00000515562 KHSRPQ92945 711 aaKnown RBP eCLIP19.52■□□□□ 0.72
DDX41-217ENST00000515562 TMEM143Q96AN5 459 aa19.52■□□□□ 0.72
DDX41-217ENST00000515562 MSLNLQ96KJ4 702 aa19.52■□□□□ 0.72
DDX41-217ENST00000515562 MTRQ99707 1265 aa19.52■□□□□ 0.72
DDX41-217ENST00000515562 EIF2AK1Q9BQI3 630 aaKnown RBP19.52■□□□□ 0.72
DDX41-217ENST00000515562 LLPHQ9BRT6 129 aaKnown RBP19.52■□□□□ 0.72
DDX41-217ENST00000515562 AGPAT5Q9NUQ2 364 aa19.52■□□□□ 0.72
DDX41-217ENST00000515562 FAM105AQ9NUU6 356 aa19.52■□□□□ 0.72
DDX41-217ENST00000515562 SPG21Q9NZD8 308 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms