RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 CDR1P51861 262 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 PPATQ06203 517 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 PHLDB3Q6NSJ2 640 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 DHX37Q8IY37 1157 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 OLIG1Q8TAK6 271 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 INTS2Q9H0H0 1204 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 RAB17Q9H0T7 212 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 TISP43B9A030 160 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 SLC16A3O15427 465 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 SLITRK3O94933 977 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 IFI35P80217 286 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 SLC29A2Q14542 456 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 MESDQ14696 234 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 Q4G0T1 1027 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 SWT1Q5T5J6 900 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 GKAP1Q5VSY0 366 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 SH2D3AQ9BRG2 576 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 PARVGQ9HBI0 331 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 ACP6Q9NPH0 428 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 HAUS2Q9NVX0 235 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 ZNF219Q9P2Y4 722 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 INTUQ9ULD6 942 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 FRMD4BQ9Y2L6 1034 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 LOC102724159A0A0B4J2E5 919 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 GOLGA6L10A0A0M3HER8 536 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 UBAP1LF5GYI3 381 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 OPLAHO14841 1288 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 TBX3O15119 743 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 IFNAR2P48551 515 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 PTENP60484 403 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 PWP2Q15269 919 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 BMT2Q1RMZ1 405 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 LRCH2Q5VUJ6 765 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 CPNE8Q86YQ8 564 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 JAMLQ86YT9 394 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 RNF25Q96BH1 459 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 PAGR1Q9BTK6 254 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 SEMA4AQ9H3S1 761 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 COL5A3P25940 1745 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 BHMG1C9JSJ3 638 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 DDX39AO00148 427 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 FTLP02792 175 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 KCNJ1P48048 391 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 JAG1P78504 1218 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 PDE4CQ08493 712 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 SYDE2Q5VT97 1194 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 MOXD1Q6UVY6 613 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 CCDC25Q86WR0 208 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 CEP57Q86XR8 500 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 DCAF4Q8WV16 495 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 UBE2TQ9NPD8 197 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 NYAP2Q9P242 653 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 MYH4Q9Y623 1939 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 FOSP01100 380 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 SMTNP53814 917 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 PMS2P54278 862 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 NPEPPSP55786 919 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 BYSLQ13895 437 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 KIAA1755Q5JYT7 1200 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 DUPD1Q68J44 220 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 C1orf186Q6ZWK4 172 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 XPO6Q96QU8 1125 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 HSD17B14Q9BPX1 270 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 AGPAT3Q9NRZ7 376 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 PTPN22Q9Y2R2 807 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 ZMYM2Q9UBW7 1377 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 ATMINO43313 823 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 GH2P01242 217 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 CHN1P15882 459 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 DLG4P78352 724 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 CCDC38Q502W7 563 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 SH3BP5LQ7L8J4 393 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 KAT5Q92993 513 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 NCAPGQ9BPX3 1015 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 WDR18Q9BV38 432 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 GPR88Q9GZN0 384 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 CARD9Q9H257 536 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 AZI2Q9H6S1 392 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 OLFML3Q9NRN5 406 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 GTPBP10A4D1E9 387 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 BMP3P12645 472 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 HOXA10P31260 410 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 MYL7Q01449 175 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 VPS72Q15906 364 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 DENND2CQ68D51 928 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 CCDC174Q6PII3 467 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 OTOP1Q7RTM1 612 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 ZNF720Q7Z2F6 126 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 TATDN2Q93075 761 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 POLR3CQ9BUI4 534 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 WRAP73Q9P2S5 460 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 PI4KBQ9UBF8 816 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 APEX2Q9UBZ4 518 aa10.01□□□□□ -0.81
LIMCH1-215ENST00000512632 SRCAPQ6ZRS2 3230 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 PPFIA2O75334 1257 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 GAP43P17677 238 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 DRD4P21917 467 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 GCLMP48507 274 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 ABCB5Q2M3G0 1257 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 CCDC91Q7Z6B0 441 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms