RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 DYDC2Q96IM9 177 aa5.34□□□□□ -1.55
HMGB1P28-201ENST00000507778 C8orf48Q96LL4 319 aa5.34□□□□□ -1.55
HMGB1P28-201ENST00000507778 SLC2A13Q96QE2 648 aa5.34□□□□□ -1.55
HMGB1P28-201ENST00000507778 PPP1R16BQ96T49 567 aa5.34□□□□□ -1.55
HMGB1P28-201ENST00000507778 ACE2Q9BYF1 805 aaPredicted RBP5.34□□□□□ -1.55
HMGB1P28-201ENST00000507778 L2HGDHQ9H9P8 463 aa5.34□□□□□ -1.55
HMGB1P28-201ENST00000507778 EPB41L4AQ9HCS5 686 aaPredicted RBP5.34□□□□□ -1.55
HMGB1P28-201ENST00000507778 SPATA6Q9NWH7 488 aaPredicted RBP5.34□□□□□ -1.55
HMGB1P28-201ENST00000507778 GEMIN8Q9NWZ8 242 aaKnown RBP5.34□□□□□ -1.55
HMGB1P28-201ENST00000507778 Q9UFV3 132 aa5.34□□□□□ -1.55
HMGB1P28-201ENST00000507778 MAGEL2Q9UJ55 1249 aa5.34□□□□□ -1.55
HMGB1P28-201ENST00000507778 CNOT6Q9ULM6 557 aaKnown RBP5.34□□□□□ -1.55
HMGB1P28-201ENST00000507778 KCTD3Q9Y597 815 aa5.34□□□□□ -1.55
HMGB1P28-201ENST00000507778 CDY2AQ9Y6F7 541 aa5.34□□□□□ -1.55
HMGB1P28-201ENST00000507778 NDUFS2O75306 463 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 CELA3BP08861 270 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 C5AR1P21730 350 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 RPL13P26373 211 aaKnown RBP5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 POLD1P28340 1107 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 NRG3P56975 720 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 CCT2P78371 535 aaKnown RBP5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 SSPNQ14714 243 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 MLC1Q15049 377 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 TMEM200BQ69YZ2 307 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 CXorf57Q6NSI4 855 aaKnown RBP5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 GAREM2Q75VX8 874 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 SAPCD2Q86UD0 394 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 TPH2Q8IWU9 490 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 PPM1NQ8N819 430 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 ZCCHC14Q8WYQ9 949 aaKnown RBP5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 NUP88Q99567 741 aaPredicted RBP5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 SLC38A3Q99624 504 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 HAPLN2Q9GZV7 340 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 GOLGA2P5Q9HBQ8 144 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 EVLQ9UI08 416 aaPredicted RBP5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 CDC42EP3Q9UKI2 254 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 ZBTB21Q9ULJ3 1066 aa5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 SMG5Q9UPR3 1016 aaKnown RBP5.33□□□□□ -1.56
HMGB1P28-201ENST00000507778 GOLGA6CA6NDK9 693 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 GOLGA6BA6NDN3 693 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 RFXAPO00287 272 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 DDX3XO00571 662 aaKnown RBP eCLIP5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 ZRANB2O95218 330 aaKnown RBP eCLIP5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 GOLGA6DP0CG33 693 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 ZNF28P17035 718 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 CYP2C19P33261 490 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 KCNQ1P51787 676 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 ADKP55263 362 aaKnown RBP5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 CAP1Q01518 475 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 TCIRG1Q13488 830 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 EIF4HQ15056 248 aaKnown RBP5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 MAN2A1Q16706 1144 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 ZNF385BQ569K4 471 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 C14orf80Q86SX3 495 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 IFNL2Q8IZJ0 200 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 BCL6BQ8N143 479 aaPredicted RBP5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 MIER2Q8N344 545 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 MAGEB6Q8N7X4 407 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 RELTQ969Z4 430 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 CSRNP2Q9H175 543 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 POLR3BQ9NW08 1133 aaPredicted RBP5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 GOLGA6AQ9NYA3 693 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 RNF114Q9Y508 228 aa5.32□□□□□ -1.56
HMGB1P28-201ENST00000507778 A0A0A6YYK5 440 aaPredicted RBP5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 KIF3BO15066 747 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 PRPF3O43395 683 aaKnown RBP5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 SEC24DO94855 1032 aaPredicted RBP5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 KLHL18O94889 574 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 KRT1P04264 644 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 C1QTNF9P0C862 333 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 ATF3P18847 181 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 AKAP5P24588 427 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 SARSP49591 514 aaKnown RBP5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 KIF23Q02241 960 aaPredicted RBP5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 DLX2Q07687 328 aaPredicted RBP5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 TOP3AQ13472 1001 aaPredicted RBP5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 GTF2H3Q13889 308 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 ADRM1Q16186 407 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 VWA3BQ502W6 1294 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 MUM1L1Q5H9M0 696 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 LMBR1LQ6UX01 489 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 BTNL9Q6UXG8 535 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 GLB1L2Q8IW92 636 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 NUDT10Q8NFP7 164 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 TTC8Q8TAM2 541 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 ZNF526Q8TF50 670 aaPredicted RBP5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 NUDT11Q96G61 164 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 PAWRQ96IZ0 340 aaKnown RBP5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 WDR92Q96MX6 357 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 SOX7Q9BT81 388 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 OSBPL6Q9BZF3 934 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 NTMQ9P121 344 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 DNAI1Q9UI46 699 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 TUBD1Q9UJT1 453 aa5.31□□□□□ -1.56
HMGB1P28-201ENST00000507778 FSBPO95073 299 aa5.3□□□□□ -1.56
HMGB1P28-201ENST00000507778 HMGCRP04035 888 aa5.3□□□□□ -1.56
HMGB1P28-201ENST00000507778 CYP1A1P04798 512 aaPredicted RBP5.3□□□□□ -1.56
HMGB1P28-201ENST00000507778 ETV4P43268 484 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms