RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 A0A1W2PQ27 194 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 A0A1W2PQ64 194 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 A0A1W2PQD8 194 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 MBLAC1A4D2B0 266 aaPredicted RBP11.15□□□□□ -0.62
NUP54-203ENST00000504173 MAGEB2O15479 319 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 LPXNO60711 386 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 USO1O60763 962 aaKnown RBP11.15□□□□□ -0.62
NUP54-203ENST00000504173 C22orf31O95567 290 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 CD4P01730 458 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 SSBP05455 408 aaKnown RBP eCLIP11.15□□□□□ -0.62
NUP54-203ENST00000504173 PLA2G4BP0C869 781 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 PFKFB1P16118 471 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 RFC5P40937 340 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 STAT6P42226 847 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 POLGP54098 1239 aaPredicted RBP11.15□□□□□ -0.62
NUP54-203ENST00000504173 ADAM17P78536 824 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 PTK7Q13308 1070 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 PUS10Q3MIT2 529 aaKnown RBP11.15□□□□□ -0.62
NUP54-203ENST00000504173 MARCH8Q5T0T0 291 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 IER5LQ5T953 404 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 TAF2Q6P1X5 1199 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 CLEC17AQ6ZS10 378 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 EXOC8Q8IYI6 725 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 METTL13Q8N6R0 699 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 TMEM87AQ8NBN3 555 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 RETREG2Q8NC44 543 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 SLC7A3Q8WY07 619 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 MRPS27Q92552 414 aaKnown RBP11.15□□□□□ -0.62
NUP54-203ENST00000504173 DHX58Q96C10 678 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 ZBTB10Q96DT7 871 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 JPH2Q9BR39 696 aaPredicted RBP11.15□□□□□ -0.62
NUP54-203ENST00000504173 PANK2Q9BZ23 570 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 SUGCTQ9HAC7 445 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 BMP2KQ9NSY1 1161 aaPredicted RBP11.15□□□□□ -0.62
NUP54-203ENST00000504173 STK17AQ9UEE5 414 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 TRIP12Q14669 1992 aaPredicted RBP11.15□□□□□ -0.62
NUP54-203ENST00000504173 ATRXP46100 2492 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 ARID2Q68CP9 1835 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 LOXHD1Q8IVV2 1947 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 A0A087X0B3 334 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 SMIM35A0A1B0GVV1 85 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 GRXCR2A6NFK2 248 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 PROB1E7EW31 1015 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 MAFO75444 373 aaPredicted RBP11.14□□□□□ -0.63
NUP54-203ENST00000504173 DGAT1O75907 488 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 CA3P07451 260 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 IL9P15248 144 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 TMOD1P28289 359 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 CLCN3P51790 818 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 DHX8Q14562 1220 aaKnown RBP11.14□□□□□ -0.63
NUP54-203ENST00000504173 EMC2Q15006 297 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 EFCAB12Q6NXP0 572 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 PADI6Q6TGC4 694 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 RUFY4Q6ZNE9 571 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 OTOP2Q7RTS6 562 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 SERINC5Q86VE9 423 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 LRRC71Q8N4P6 559 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 CCDC155Q8N6L0 562 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 IQUBQ8NA54 791 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 LARP4BQ92615 738 aaKnown RBP11.14□□□□□ -0.63
NUP54-203ENST00000504173 RAD54LQ92698 747 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 CTAGE1Q96RT6 745 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 CEP89Q96ST8 783 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 MAP7D2Q96T17 732 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 MTRQ99707 1265 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 PYM1Q9BRP8 204 aaKnown RBP11.14□□□□□ -0.63
NUP54-203ENST00000504173 FAM49AQ9H0Q0 323 aaPredicted RBP11.14□□□□□ -0.63
NUP54-203ENST00000504173 IRF2BPLQ9H1B7 796 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 DHX33Q9H6R0 707 aaKnown RBP11.14□□□□□ -0.63
NUP54-203ENST00000504173 ATP6V0A4Q9HBG4 840 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 ALG13Q9NP73 1137 aaKnown RBP11.14□□□□□ -0.63
NUP54-203ENST00000504173 BLOC1S4Q9NUP1 217 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 KCNH3Q9ULD8 1083 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 PCDHA2Q9Y5H9 948 aa11.14□□□□□ -0.63
NUP54-203ENST00000504173 C19orf67A6NJJ6 358 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 GOLGA6L22H0YM25 854 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 POLR2DO15514 142 aaKnown RBP11.13□□□□□ -0.63
NUP54-203ENST00000504173 GAS2O43903 313 aaKnown RBP11.13□□□□□ -0.63
NUP54-203ENST00000504173 PRPF40AO75400 957 aaKnown RBP11.13□□□□□ -0.63
NUP54-203ENST00000504173 RPLP2P05387 115 aaKnown RBP11.13□□□□□ -0.63
NUP54-203ENST00000504173 ATP2A2P16615 1042 aaKnown RBP11.13□□□□□ -0.63
NUP54-203ENST00000504173 SYKP43405 635 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 ID4P47928 161 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 NDUFA8P51970 172 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 BFSP2Q13515 415 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 MCM6Q14566 821 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 PTCRAQ6ISU1 281 aaPredicted RBP11.13□□□□□ -0.63
NUP54-203ENST00000504173 RSPH3Q86UC2 560 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 GPBP1Q86WP2 473 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 SYT2Q8N9I0 419 aaPredicted RBP11.13□□□□□ -0.63
NUP54-203ENST00000504173 CAGE1Q8TC20 777 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 LRRC15Q8TF66 581 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 DNAJB3Q8WWF6 145 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 DHX38Q92620 1227 aaKnown RBP11.13□□□□□ -0.63
NUP54-203ENST00000504173 WNT8BQ93098 351 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 RUSC1Q9BVN2 902 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 PPP1R12CQ9BZL4 782 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 GOLPH3LQ9H4A5 285 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 PRKAG3Q9UGI9 489 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 HPSEQ9Y251 543 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms